Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq158 145 1e-29 seq1613 140 6e-28 seq1408 123 5e-23 seq1564 95.1 2e-14 seq1336 87.8 4e-12 >seq158 Length=5104435 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||||||| || |||||||| ||||| || || || ||| | | ||| Sbjct 4734282 CGGAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGCGGCCG 4734223 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| || ||||| || || | || || || || || || || ||||| Sbjct 4734222 TCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 4734163 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || ||||| ||||| ||||| || ||| | || || || || | || || Sbjct 4734162 TCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACGTCGAGGGTGATG 4734103 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| ||||| |||||||| Sbjct 4734102 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4734068 >seq1613 Length=7518837 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| ||||| || | ||||||||||||||||||||| || || || ||||| Sbjct 7390912 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 7390853 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || || || ||||| || || || || || || || Sbjct 7390852 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7390793 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || || || || || || || | || || || Sbjct 7390792 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 7390733 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || |||| ||||| || || |||||||| Sbjct 7390732 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390686 >seq1408 Length=2444343 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||| || || | || || ||||| | | || ||||| | ||| Sbjct 1486447 TGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATCTTCCATTTGC 1486506 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| ||||| ||||||||| |||| || ||||| Sbjct 1486507 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCCTATCCTGGATCTTG 1486566 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||| |||||| || ||||| | ||||| || || | ||| || ||||| || || Sbjct 1486567 GCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTAATGGTCTTCCCCGTA 1486626 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || | | || |||||||| Sbjct 1486627 AGGGTTGTCATGAAAATCTGCAT 1486649 >seq1564 Length=1685133 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | | |||||||| | || || ||||| ||||||||||| || | ||| Sbjct 1484821 TGGTGGTACTTTGTGTCTAAAGGAGTGGAGTATTTAGACACGGTGTTTTTTATCTTGAGG 1484880 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || ||||| || ||| | || ||||||||||| | ||| |||||||| || Sbjct 1484881 AAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 1484940 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | || || || |||| Sbjct 1484941 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAAG 1484977 >seq1336 Length=3010155 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || || ||||| || |||||| | ||||| ||||| |||||| || Sbjct 1470236 CCATCTTCCAGTTGCTTGCCGGCAAAAATGAGTCTTAGCTGATCAGGAGGAATTCCTGCC 1470177 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || || || ||||| || ||||||||||| | ||||| Sbjct 1470176 TTGTCCTGGATCTTGGCCTTTACATTTTCTAATGTATC 1470139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981799939874613