Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1865 109 7e-19 seq1390 105 9e-18 seq898 105 9e-18 seq2112 104 3e-17 seq1613 104 3e-17 seq1603 100 4e-16 seq1485 89.7 7e-13 >seq1865 Length=751031 Score = 109 bits (120), Expect = 7e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709 || ||| |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 108533 TGACTTCTTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 108592 Query 8710 TTCGATTCCCCGACGAGGAG 8729 ||||||||||||||| |||| Sbjct 108593 TTCGATTCCCCGACGGGGAG 108612 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 258566 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 258507 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 258506 CCCCGACGGGGAG 258494 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 108541 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 108600 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 108601 CCCGACGGGGAGG 108613 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 258565 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 258506 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 258505 CCCGACGGGGAG 258494 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 108612 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 108553 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 108552 TACTAACGAGGA 108541 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 258494 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 258553 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 258554 TACTAACGAGGA 258565 >seq1390 Length=15035100 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 11076609 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 11076550 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 11076549 CCCCGACGGGGAG 11076537 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 11076608 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 11076549 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 11076548 CCCGACGGGGAGG 11076536 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 11076537 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11076596 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 11076597 TACTAACGAGGA 11076608 >seq898 Length=3804267 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 75242 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 75301 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 75302 CCCCGACGGGGAG 75314 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 75243 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 75302 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 75303 CCCGACGGGGAG 75314 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 75314 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 75255 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 75254 TACTAACGAGGA 75243 >seq2112 Length=5769415 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 3968066 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 3968007 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 3968006 CCCGACGGGGAG 3967995 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 3968066 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 3968007 Query 11789 CCCGACGAGGAGGGAGGTT 11807 ||||||| ||||| |||| Sbjct 3968006 CCCGACGGGGAGGTTGGTT 3967988 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 3967995 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3968054 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 3968055 TACTAACGAGGA 3968066 >seq1613 Length=7518837 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 7375617 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 7375676 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 7375677 CCCCGACGGGGAGG 7375690 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7375618 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7375677 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7375678 CCCGACGGGGAG 7375689 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 || |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 7381005 CCCGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 7381064 Query 11785 ATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 7381065 ATTCCCCGACGGGGAGG 7381081 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7381009 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7381068 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7381069 CCCGACGGGGAG 7381080 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7375689 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7375630 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7375629 TACTAACGAGGA 7375618 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7381080 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7381021 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7381020 TACTAACGAGGA 7381009 >seq1603 Length=1546321 Score = 100 bits (110), Expect = 4e-16 Identities = 70/77 (91%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCC-GTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||||||||||||||||| ||||| ||| | ||||| | ||||||||||||||||| Sbjct 1493873 CAGTCCTCGTTAGTATAGTGGTGAGTATCCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 1493814 Query 11785 ATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 1493813 ATTCCCCGACGGGGAGG 1493797 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCC-GTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||||||||||||||| ||||| ||| | ||||| | |||||||||||||||||||| Sbjct 1493870 TCCTCGTTAGTATAGTGGTGAGTATCCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1493811 Query 8717 CCCCGACGAGGAGCAG 8732 |||||||| |||| || Sbjct 1493810 CCCCGACGGGGAGGAG 1493795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAAC-GGGGATATTAACCACT 139411 |||| ||||||||| |||||||||||||||||| | |||| | ||||||| | |||||| Sbjct 1493798 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGATACTCACCACT 1493857 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 1493858 ATACTAACGAGGA 1493870 >seq1485 Length=2023564 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| || || |||| ||||| | ||||||||| |||||||||| Sbjct 233083 GTCCTCGTTAGTATAGTGGTGAGCATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATT 233142 Query 11788 CCCCGACGAGGAGG 11801 |||| ||| ||||| Sbjct 233143 CCCCAACGGGGAGG 233156 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| || || |||| ||||| | ||||||||| ||||||||||| Sbjct 233084 TCCTCGTTAGTATAGTGGTGAGCATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 233143 Query 8718 CCCGACGAGGAG 8729 ||| ||| |||| Sbjct 233144 CCCAACGGGGAG 233155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652827116066480