Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2012 280 2e-70 seq63 194 2e-44 seq1185 158 1e-33 >seq2012 Length=6040582 Score = 280 bits (310), Expect = 2e-70 Identities = 620/927 (67%), Gaps = 7/927 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 2131310 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 2131251 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| ||| | | || |||| || | || || | Sbjct 2131250 TGTCAAACTTATTGGCAAACAAGTGGTGCATGCGCAGCA---TCCAGTTCAAGTCACCTG 2131194 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || |||||||| || |||||||| || |||||||| || || || |||| || | Sbjct 2131193 CTCCAAAGACGCACACAGAACGCACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCACCCT 2131134 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || || |||| || || |||||||||| Sbjct 2131133 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAATCTAGCAATCGCATGCATGTCGG 2131074 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | | ||| |||| Sbjct 2131073 ACATGTCATACTTATGGCTTAAGGACAGCGAGCCTGGGACTTCAGGGATCCGCTGAAGAG 2131014 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || || || || || || || || | ||||||||| |||| | || Sbjct 2131013 TGGCCCAGAGATACTCATCCGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTCTGGA 2130954 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||||| ||| || || ||| | || | ||| || || || | Sbjct 2130953 TTTTTTCATTCTCTAGAACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTGC 2130894 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| || | | ||||||| || ||||||| || ||||| | | Sbjct 2130893 CTGAAAACAGAGGCGTTTCAAGAGGAGGGTGCACTTTGTCAGTCCCTGTGTTTGTCAGCT 2130834 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | |||||| | | ||| ||||||| | | ||| ||| | | | Sbjct 2130833 TTCCATTTACGACTGCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCT 2130774 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| || | ||| |||| | || || || || |||| Sbjct 2130773 CAGTTTCTAGGTTGTTTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 2130714 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | || || ||||| || | || ||||| | | || | || Sbjct 2130713 TTTTAATAGGAAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTC 2130654 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| ||||||||||| || |||||||| | Sbjct 2130653 TGTAAAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACGCGACTCCATGAGGCGTACACCA 2130594 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 ||||||||| | | |||| ||||||||||| |||||| || | || || ||||| | Sbjct 2130593 CGCTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGATGCGATGCCAATCACCG 2130534 Query 162839 CCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896 || | || ||| || | ||| || || || || | ||| || | |||||| || Sbjct 2130533 CCGCCAAAAAGGAATC--CTCTGATTTTCTGTCCACATGAATGCAATAGAAATTCTGTGG 2130476 Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956 ||||||||||||||| | || || | ||| || || || || || || || ||||| Sbjct 2130475 CATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACGACTATAGA 2130416 Query 162957 ATACGCTATGGGGAACTCAGCCTCCTC 162983 ||| ||||| || ||||| ||||| || Sbjct 2130415 ATATGCTATTGGAAACTCTGCCTCTTC 2130389 >seq63 Length=220577 Score = 194 bits (214), Expect = 2e-44 Identities = 236/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || ||||| ||||| ||||| || | | Sbjct 189915 CAGAGAGGGTAAGGCAGGCTACTCCTGAGATCTTCCCGGAACCAAAGGTATTGAAGAGGC 189856 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 | | |||| || || ||||||| |||||| ||||| || || | || || || || Sbjct 189855 AATTGTAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGA 189796 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||| || || | ||||||||| ||||| ||||| | Sbjct 189795 GTCCTAGCTGAGTGATGTTTATCTTGTCTTTATAAGCAGGCTGGACCACAACCCCGTGGT 189736 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 || |||||| ||| ||||||||| ||| |||||| ||| || |||||||| || || | Sbjct 189735 CCTTGCTGAAGGTGATCATGTTTTCTGGGATCGTAGGCTTGATTTTCTGCCATGTCACAA 189676 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | ||||| || |||||| |||| |||||||||||||||| | Sbjct 189675 TCAAGACTTCCTGGGAAGTTTGCAGGGAGCATTTTAAGGAAGCAGGTGTGTTCAGCAGCA 189616 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| ||||| || ||||| Sbjct 189615 CTCTTTCATCTTGGGTCACCAC 189594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/251 (68%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| |||| || || ||| |||||| ||| | |||| ||| |||||||||| Sbjct 192280 ACAGTTTCCCTGAGGTTGGTCACACTCCCCAGGTGCCACACTTGGCAGATCACCTCCT-- 192223 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||| ||||| || || ||||| || || || | ||| || ||||| || ||||| Sbjct 192222 -TCCCCAACTGACTCTTGGGGTCTTTGACCTGGAGGACGCTGGTCACAGACGTGGTCCCA 192164 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || ||| ||||| | | |||| || || || | || || | | ||||| Sbjct 192163 TTGGAGTGTGAGAGAACC---TCACTACTGTTCTCAATCTCCGACCCAGAGATCTTCCAG 192107 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 || || ||| | ||| | ||| | ||||||||||| || |||| || || ||| Sbjct 192106 AAGATCTGAGGGGGTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCGTCAAAG 192047 Query 171740 AACTCATAGTG 171750 || | |||||| Sbjct 192046 AATTTATAGTG 192036 >seq1185 Length=3570589 Score = 158 bits (174), Expect = 1e-33 Identities = 450/681 (66%), Gaps = 17/681 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | ||||||| || | | || || | | | Sbjct 1197653 TCCAGTTAAAGTAACTAAGGTATAACTTATCGTTTTTGTCAACCTCCTTCAGATACTTTG 1197712 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 1197713 CTAGCTCACTGGGAGAGTTATAATCCTCCACATGAATGAATGAATCTGCTGGAATATAAT 1197772 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 |||| || || || || |||| || || || | ||||| | || |||| || || Sbjct 1197773 TTTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 1197832 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | |||||| ||||| | ||||| |||| Sbjct 1197833 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATGGAGTTTTCAAAGGAAAGATAAAATT 1197892 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 1197893 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 1197950 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || || || ||| || || || || ||| Sbjct 1197951 CCCATAGGTATGGATTTCAATACTTTTGCTTAGTTCATTGTAATA-CTTGACCCTGGCGT 1198009 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 1198010 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 1198064 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | | | | || | | || | || | | ||||| ||||| || ||||| || Sbjct 1198065 TTCAAACATGAAGGGGTTTGTGCTCACTGTCAAGAAGCCATAAGGCACTTGGATATCTGA 1198124 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 |||||| | || || | || |||||||| |||| || |||| || |||| ||| Sbjct 1198125 GTCGCGGCGATAAGTCAGAGTCAGATTGAACAGGTGCTCAATACCACTCTTTTG--GGGT 1198182 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 ||| | |||| ||||| || |||||||| ||||| || || |||| ||| || | | | Sbjct 1198183 GTGTGAGTGGGTGATTCCAAATTCATCCAGATCCATTTCTGGAAGGGTGGCCTAGCCTGC 1198242 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | || |||| ||| || |||| ||| || | | || |||| | | Sbjct 1198243 TGAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGAGAT 1198302 Query 177540 TTGTAATAAACAGATCTGTCT 177560 |||| || | ||| | |||| Sbjct 1198303 TTGTTGTACAGAGAACGGTCT 1198323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578416331723200