Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq158 125 5e-24 seq1495 116 2e-21 seq1472 107 1e-18 seq1435 87.8 1e-12 >seq158 Length=5104435 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || |||||| |||||| || || ||||| || ||||| ||||| |||| || Sbjct 4734277 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCCTC 4734218 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| ||||||||||||| ||||||||| || | || | || || ||||| Sbjct 4734217 CAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 4734158 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| | || ||||| || | |||||| || | || ||||| | ||||| || | Sbjct 4734157 GATTTT-AGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACGTCGAGGGTGATGGTCT 4734099 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 4734098 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4734068 >seq1495 Length=1971954 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| |||||| || || ||||| || ||||| ||||| |||| || Sbjct 943324 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCCTC 943383 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| ||||||||||||| ||||||||| || | || | || || ||||| Sbjct 943384 CAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTG 943443 Query 33660 AATTTTCTGTTTCAACATAGT-CACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| | || ||||| | || |||||| || | || || || | ||||| || | Sbjct 943444 GATTTT-AGCTTTAACATTCTCCATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 943502 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 943503 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 943533 >seq1472 Length=2102760 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| | || || ||||| || ||||| ||||| |||| || Sbjct 659103 CACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCTTC 659044 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| ||||||||||||| | ||||||| || | || | || || ||||| Sbjct 659043 CAGCTGTTTGCCGGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 658984 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| | || ||||| || | |||||| || | || || |||| ||||| || | Sbjct 658983 GATTTT-AGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCT 658925 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 658924 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 658894 >seq1435 Length=8499281 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||| || || || |||||| || ||||||||||| || Sbjct 997226 ACCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 997167 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 997166 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 997107 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || || ||| |||| || | ||||||||| | |||| Sbjct 997106 GATGCCCTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCGCTGGGCTCCA 997048 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 997047 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 996998 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||| || || || |||||| || ||||||||||| || Sbjct 997454 ACCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 997395 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 997394 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 997335 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || || ||| |||| || | ||||||||| | |||| Sbjct 997334 GATGCCCTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCGCTGGGCTCCA 997276 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 997275 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 997226 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||||| || || || |||||| || ||||||||||| || Sbjct 997681 CCACCCCTGAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 997622 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 997621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 997562 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || || || ||| |||| || | ||||||||| | ||||| Sbjct 997561 ATGCCCTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCGCTGGGCTCCAC 997503 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 997502 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 997454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695318824640