Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1408 93.3 1e-13 seq1613 86.0 1e-11 >seq1408 Length=2444343 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 206187 AACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT 206246 ||| || || || || || || ||| | || || ||| | || ||| | ||| | Sbjct 1486632 AACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCCTAGGATACAATAGAAAATAT 1486573 Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 |||| ||||| || || | ||||||||| || || |||||||| ||||| || Sbjct 1486572 AAAGGCCAAGATCCAGGATAGGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGC 1486513 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || ||||| ||||||||||| ||||| | || |||||| || || || || || Sbjct 1486512 TGGCAAGCAAATGGAAGATGGACATGCTTTGTCTGACTACAACAATCAAAAGGAATCCAC 1486453 Query 206367 TCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||| ||||||||||| Sbjct 1486452 TCTTCATCTTGTGTTGAGACTTCG 1486429 >seq1613 Length=7518837 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| |||||||| |||||||||| || ||||||| || || | ||||| ||| Sbjct 7390894 ACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 7390835 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| ||||||||||| |||| Sbjct 7390834 AGCTGCTTCCCGGCGAAGATGAGCC 7390810 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| |||| ||||| ||||| |||| Sbjct 7389333 AAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 7389392 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || |||||| Sbjct 7389393 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGAGGCTCATCTTC 7389452 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| ||||||| ||||| Sbjct 7389453 GCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCC 7389512 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 7389513 ACTCTGCACCTGGT 7389526 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| |||| ||||| ||||| |||| Sbjct 7389561 AAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 7389620 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || |||||| Sbjct 7389621 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGAGGCTCATCTTC 7389680 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| ||||||| ||||| Sbjct 7389681 GCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCC 7389740 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 7389741 ACTCTGCACCTGGT 7389754 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| ||||| |||| Sbjct 7390701 AAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 7390760 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || |||||| Sbjct 7390761 GTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGAGGCTCATCTTC 7390820 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| |||||||||| ||| Sbjct 7390821 GCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAATCT 7390880 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 7390881 ACTCTGCACCTGGT 7390894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181787987114807