Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq63 370 1e-97 seq1421 226 3e-54 seq312 178 2e-39 seq1626 174 2e-38 >seq63 Length=220577 Score = 370 bits (410), Expect = 1e-97 Identities = 274/320 (86%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| || |||||||||||||| || || ||| | |||||||||||| Sbjct 189594 GTGGTGACCCAAGATGAAAGAGTGCTGCTGAACACACCTGCTTCCTTAAAATGCTCCCTG 189653 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||||| ||||| || ||||||| || ||||||||||||||||| || || ||||| Sbjct 189654 CAAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGCCTACGATCCCAGAA 189713 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || || ||||| ||||||||||| ||||||||||| |||||||| |||||| Sbjct 189714 AACATGATCACCTTCAGCAAGGACCACGGGGTTGTGGTCCAGCCTGCTTATAAAGACAAG 189773 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| ||||| |||||||| ||||||||||| || || |||||||||||| | Sbjct 189774 ATAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 189833 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| ||||| |||||||| || |||||||| || ||||| ||||| || Sbjct 189834 GAGGATGAGGGGTGTTACAATTGCCTCTTCAATACCTTTGGTTCCGGGAAGATCTCAGGA 189893 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || |||||||| |||||||| Sbjct 189894 GTAGCCTGCCTTACCCTCTC 189913 Score = 302 bits (334), Expect = 5e-77 Identities = 236/282 (84%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || || || || |||||||| ||||| |||||||| || |||| Sbjct 192010 TCCCAGTACAGCCCACAGTATTCCTTCACTATAAATTCTTTGACGACCACCTAAATATCA 192069 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| || |||||||| || |||||||| || ||||| || | Sbjct 192070 CTTGCTCTGCCAATGCCCGCCCACCCCCTCAGATCTTCTGGAAGATCTCTGGGTCGGAGA 192129 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| |||||||| |||||||| || || || ||||| || || ||||| ||||| || | Sbjct 192130 TTGAGAACAGTAGTGAGGTTCTCTCACACTCCAATGGGACCACGTCTGTGACCAGCGTCC 192189 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 192190 TCCAGGTCAAAGACCCCAAGAGTCAGTTGGGGAAGGAGGTGATCTGCCAAGTGTGGCACC 192249 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| || ||| | ||||||||||| ||||| |||| Sbjct 192250 TGGGGAGTGTGACCAACCTCAGGGAAACTGTGAGCAAAGGTA 192291 >seq1421 Length=2339835 Score = 226 bits (250), Expect = 3e-54 Identities = 558/838 (67%), Gaps = 29/838 (3%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| ||||||||| | || |||| || | |||||| ||||| | | |||||| Sbjct 437103 GTATTCTCTGGTGGTCGTGATTGGTCTGCTGGGCAATCTGATGGTGGTGGTGATCCTCAC 437044 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| |||| ||||||||||||||||||||||| |||| || ||| Sbjct 437043 AAAATACAAGAGGCTCCGGATTATGACCAACATCTTCCTGTTCAATTTGGCAATTTCTGA 436984 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | ||||||| || || || ||||||||| | | || |||| || Sbjct 436983 CTTGCTCTTTCTTTTCACTCTGCCATTCTGGATTCAC-TATGTTTGGCGGGA-----TGA 436930 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | ||| |||||||||||||| | | || ||||| || || |||| Sbjct 436929 GTGGGTTTTTGGCCATCACATGTGTAAGTTCCTCATTGGGCTTTGTTACACGGGCTTGTA 436870 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || |||||||||||||| || ||| ||||||| || | || |||| Sbjct 436869 CAGCGAGATCTTTTTCATCATCCTGTTGACGCTAGACCGGTATCTGGCCATCGTCCACGC 436810 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | ||| || | | |||||| | |||| || | |||| Sbjct 436809 TGTGTTTGCCCTTCGAACCCGGACCGTCACTTTTGGCATCATAACCAGTGTCTTCACCTG 436750 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| | | | | | || | || || |||||||| ||| | | | | | Sbjct 436749 GGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTATCTTCCATGGGTTCCAAGAGGAATT 436690 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTCCTACACAG------------ACTTTTGGAAGGGGGT 9077 || || ||||||| | | |||| ||| | | |||||| | Sbjct 436689 TGGTCAGTATGTCTGCCTTCCTTTCTACCCAGAAACAGCAGAAAATATCTGGAAGAGTAC 436630 Query 9078 TGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTG 9137 ||||| || |||| || | | ||| ||||||||||| || ||||| |||| Sbjct 436629 CCATGTTCTGAGAATGAATATCTTGAGTCTCGCTCTGCCTTTGCTCATTATGGCTGTCTG 436570 Query 9138 CTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGCACG 9196 ||||| |||||| || || || | | |||| |||| || ||| | | Sbjct 436569 CTACTCAGGAATCATTAAAACACTGCTGAGATGCCC-TAACA---AGAAAAAGTACAAGG 436514 Query 9197 CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACG 9256 || || ||||||||| |||| ||||| | | ||| || || ||| || |||||| Sbjct 436513 CCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCGTTTTCTGGGCACCTTACAACC 436454 Query 9257 TCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGG-CCAGACTGTGA--AGCGC 9313 | | ||| |||| ||| | ||| || | ||||| |||| |||||| || || Sbjct 436453 TGGTTCTCTTTTTCTCCACTTTTCAAACAACCTTCCTTGGGACCAG-CTGTGATCAGAGC 436395 Query 9314 GGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373 || | ||||||||||||| ||||| | ||||||||||||| ||| |||||||| | Sbjct 436394 -AAACA-GCTGGACATGGCCCTGCTGGTGACAGAGATGATCGCCTACACGCACTGCTGTG 436337 Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAGGACTT 9431 ||||||| || |||||||| ||||| ||||| | |||||| ||||||| || |||| Sbjct 436336 TCAACCCTGTGATCTACGCATTTGTTGGCGAGAGGTTCCAGAAGAACCTCCACCACTT 436279 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||||||||||||| | |||| || | ||||| ||||||| |||| |||||||| Sbjct 478792 GTACTCTCTGGTGTTTGTCATTGGCCTGGTCGGCAACATCCTGGTGGTCCTGGTCCTCAT 478851 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | ||||||| ||||| ||| ||||||||||| || ||| Sbjct 478852 GCAATACAAGAGGCTCAAAAGTATGACCAGCATCTACCTTCTCAACCTGGCCATTTCTGA 478911 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 478912 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 478949 >seq312 Length=4586310 Score = 178 bits (196), Expect = 2e-39 Identities = 138/167 (83%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 1567122 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 1567181 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| |||||||| || |||| Sbjct 1567182 TGCCCCAGGCTGAGAACCAC------------GGCCCAGACATCAAGGAGCACGTGAACT 1567229 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| |||||||||||||||| ||| Sbjct 1567230 CCCTGGGGGAAAAGCTGAAGACCCTCCGAGTGAGGCTGCGGCGCTGT 1567276 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140 ||||||| |||| ||||| ||||| |||||||| |||| ||||||||||||||||||| Sbjct 1565880 AGTCTGAGAACAGCTGCACCCACTTCCCAACCAGCCTGCCCCACATGCTCCATGAGCTCC 1565939 Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172 | ||||| || ||||| || |||||||| ||| Sbjct 1565940 GAGCCGCCTTCAGCAGGGTGAAGACTTTCTTT 1565971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || |||||| Sbjct 1569445 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACG 1569504 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| || |||||||| || |||| Sbjct 1569505 TAGAAGCCTATATGACAACGAAGATGA 1569531 >seq1626 Length=1472199 Score = 174 bits (192), Expect = 2e-38 Identities = 138/166 (83%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 527135 CTTCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 527076 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct 527075 GGGCACACCCAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 527016 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 ||||||| |||||||| ||| ||||| || ||||| |||||| Sbjct 527015 CACCACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGAGCCATG 526970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583472194768800