Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq1690 86.0 9e-12 >seq1690 Length=7296525 Score = 86.0 bits (94), Expect = 9e-12 Identities = 188/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 214601 AGGGAAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACT 214660 || |||||| || |||| ||| | || || |||| ||||| || || ||| | || || Sbjct 2275896 AGAGAAGGAAATGGCTGCGGAGTTAGAAGCACTCTATGGTGACATTGATGCCATGGAGCT 2275955 Query 214661 CTACGCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCT 214720 || ||| | || | ||||| || | || ||||||||| |||| || | | | Sbjct 2275956 GTATCCTGCCCTTCTGGTGGAAAAGCCTCGCCCAGATGCCATCTTCGGGGAGACCATGGT 2276015 Query 214721 CGAGTCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGG 214780 || ||||| || |||||| ||| ||||| || || ||||| || || | Sbjct 2276016 AGAACTTGGGGCACCATTCTCCTTGAAAGGACTTTTGGGTAATCCTATCTGTTCTCCTGA 2276075 Query 214781 CTACTGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGAC 214840 ||||||||||| || ||| | ||| | | |||| || ||| | | | || | Sbjct 2276076 CTACTGGAAACCCAGCACTTTTGGTGGAGAAGTAGGTTTTAAAATCATCAACACTGCCTC 2276135 Query 214841 CCTTCAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTT 214882 |||||||||||||||| | ||||| ||||| ||||| || Sbjct 2276136 AATTCAGTCTCTCATCTGCAATAACGTGAAGGGCTGTCCTTT 2276177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723321206506080