Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1723 111 1e-19 seq3 89.7 4e-13 seq1419 84.2 2e-11 seq1369 82.4 6e-11 >seq1723 Length=12986255 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| |||||| || ||||| ||||| || ||||| || Sbjct 6658155 CGGTTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATCGC 6658097 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 6658096 CATGGAAAACATACATTCTGAAATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 6658039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 44113 TGATTCTT--TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 ||| |||| | |||||||| |||| || ||||| | |||||||| || || ||||| Sbjct 6656028 TGACTCTTAATAGGAGAACGGGTTGTAGCCTTTGCCGCAGTGGAAGGAATCTTTTTTTCT 6655969 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || || ||||| ||||||| ||| | ||||||||||| ||||||| || | || ||| Sbjct 6655968 GGCTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTT 6655909 Query 44231 TCAAATGAGTTAATAAGTCGTGATGA 44256 || ||||| | || || | ||||| Sbjct 6655908 TCCAATGAACTTATTAGCAGAGATGA 6655883 >seq3 Length=5570360 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 3124872 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 3124931 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 3124932 AACGAGTTTCAGAGTATCAGCG 3124953 >seq1419 Length=2355583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/346 (67%), Gaps = 11/346 (3%) Strand=Plus/Plus Query 43719 AATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAG 43778 |||||| || ||| ||||| |||||| | ||||| |||| || ||||||||||| || | Sbjct 2073195 AATATCGTGGCATTTGGCAGATGTACCAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGG 2073254 Query 43779 AAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACA 43836 | || ||| | || ||| | ||||| |||| || | || || || | | | Sbjct 2073255 AGGTAGATCACTCCAAGGACATTCAGCAC--TGGA-AGCCCTGAAGCCTGTGGAGAGAGA 2073311 Query 43837 TTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTT 43896 |||| ||||| || | |||| || |||| || || || || | |||||| | Sbjct 2073312 TTTTGTATCTCGGGCTCTGGCTTTCGTTGCAGCAAGTGATGGAGCTGGATATGAAAGCCT 2073371 Query 43897 GGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTC 43955 ||| | ||| | | |||| || |||| |||||||| ||||| | ||| |||| Sbjct 2073372 GGTGCCGCAATTTCGTCCAAAAGTACAGATTA-CAGAAGCAATGTGTTTCTGTGGCTTTC 2073430 Query 43956 AAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 || || ||| || || | |||| ||||| || ||||| || | || || | ||| | Sbjct 2073431 AAGGTGACATGGACAACTTATATTCTGAAATATAGAGTCTCCTTGTTGACACTTGCATTA 2073490 Query 44016 AAGATGGGCACGAGAAG--CATCGATTGTTTAATGCGATAGAAACA 44059 ||||| | | ||| || | | | | || ||||| || |||||| Sbjct 2073491 AAGATTGCAAAGAGGAGGCCTTTG--TCTTCAATGCTATTGAAACA 2073534 >seq1369 Length=2758518 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 1990292 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 1990233 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 1990232 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTACTGTCCAAAATT 1990173 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | || ||||| || || ||||| ||||| ||| Sbjct 1990172 GATGGGGTAGAGCAGCTGAACAACATCTTAGTCATTGGTATG 1990131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445503062835