Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1495 109 5e-19 seq158 109 5e-19 seq1472 104 2e-17 >seq1495 Length=1971954 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || | || || ||||| || ||||||||||| Sbjct 943305 TGCCGCCCCGCAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTG 943364 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| |||| || |||||||| ||||| |||| |||||||| || || || | Sbjct 943365 AGAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTG 943424 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| || ||| | | || | ||||| ||| |||| Sbjct 943425 GAATGCCCTCCTTGTCTTGGATTTTAGCTTTAACATTCTCCATGGTGTCACTGGGCTCAA 943484 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || || || || | ||||||||||| || ||||||||||| ||||| |||| Sbjct 943485 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTCTGC 943539 >seq158 Length=5104435 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || | || || ||||| || ||||||||||| Sbjct 4734296 TGCCGCCCCGCAGGCGGAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGTCTG 4734237 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| |||| || |||||||| ||||| |||| |||||||| || || || | Sbjct 4734236 AGAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTG 4734177 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| || ||| | | || | ||||| ||| |||| Sbjct 4734176 GGATGCCCTCCTTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAA 4734117 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || || || || | ||||||||||| || ||||||||||| ||||| |||| Sbjct 4734116 CGTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTCTGC 4734062 >seq1472 Length=2102760 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || |||||| | || ||||||||||| | |||| ||||||| Sbjct 659102 ACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCTTCC 659043 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| ||||| |||| ||| |||| || || || || | ||||| || || | Sbjct 659042 AGCTGTTTGCCGGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 658983 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | | || | ||||| ||| ||||| || || || || | ||| Sbjct 658982 ATTTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTG 658923 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 |||||||| || ||||||||||| ||||| |||| Sbjct 658922 CCCGTCAGGGTCTTCACAAAGATCTGCATGTCTGC 658888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923177349704