Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq158 122 5e-23 seq1495 113 3e-20 seq1613 107 1e-18 seq1472 102 5e-17 >seq158 Length=5104435 Score = 122 bits (134), Expect = 5e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | |||||| || |||||| ||| || || || || || ||||| Sbjct 4734295 GCCGCCCCGCAGGCGGAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGTCTGA 4734236 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || ||||| |||||||| || | |||||| ||||| || || Sbjct 4734235 GAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGG 4734176 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | |||||| | ||| ||||| | ||| | Sbjct 4734175 GATGCCCTCCTTGTCTTGGAT-TTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAA 4734117 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGT 34708 | || | ||| || || || || || | || |||||||| |||||||||| Sbjct 4734116 CGTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGT 4734066 >seq1495 Length=1971954 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | |||||| || || ||| ||| || || || || || ||||| Sbjct 943306 GCCGCCCCGCAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 943365 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || ||||| |||||||| || | |||||| ||||| || || Sbjct 943366 GAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGG 943425 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | |||||| | || ||||| | ||| | Sbjct 943426 AATGCCCTCCTTGTCTTGGAT-TTTAGCTTTAACATTCTCCATGGTGTCACTGGGCTCAA 943484 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGT 34708 | || | ||| || || || || || | || |||||||| |||||||||| Sbjct 943485 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGT 943535 >seq1613 Length=7518837 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| || |||||| |||||| || ||||| || || || Sbjct 7389316 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7389257 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || || ||||| || || | | ||| ||||| || || Sbjct 7389256 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7389197 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7389196 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 7389138 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 7389137 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389090 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| || |||||| |||||| || ||||| || || || Sbjct 7389544 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7389485 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || || ||||| || || | | ||| ||||| || || Sbjct 7389484 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7389425 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7389424 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 7389366 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 7389365 CTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389318 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| || |||||| |||||| || ||||| || || || Sbjct 7389772 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7389713 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || || ||||| || || | | ||| ||||| || || Sbjct 7389712 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7389653 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7389652 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 7389594 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 7389593 CTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389546 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| || |||||| |||||| || ||||| || || || Sbjct 7390000 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7389941 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || || ||||| || || | | ||| ||||| || || Sbjct 7389940 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7389881 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7389880 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 7389822 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 7389821 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389774 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| || |||||| |||||| || ||||| || || || Sbjct 7390228 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7390169 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || || ||||| || || | | ||| ||||| || || Sbjct 7390168 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7390109 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7390108 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 7390050 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 7390049 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390002 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| || |||||| |||||| || ||||| || || || Sbjct 7390456 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7390397 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || || ||||| || || | | ||| ||||| || || Sbjct 7390396 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7390337 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7390336 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 7390278 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 7390277 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390230 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| |||| || |||||| |||||| || ||||| || || || Sbjct 7390684 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7390625 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || || ||||| || || | | ||| ||||| || || Sbjct 7390624 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7390565 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 7390564 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 7390506 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 7390505 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390458 >seq1472 Length=2102760 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||| || || ||| || | || || || || ||||| || || || ||||||| Sbjct 659103 CACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCTTC 659044 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || ||||| |||||||| || | | |||| ||||| || || | |||||||||||| Sbjct 659043 CAGCTGTTTGCCGGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 658984 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| ||| | |||||| | ||| ||||| | ||| || || | ||| || || | Sbjct 658983 GAT-TTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCT 658925 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATGT 34708 | || || | || |||||||| |||||||||| Sbjct 658924 TGCCCGTCAGGGTCTTCACAAAGATCTGCATGT 658892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721287892911