Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1495 123 2e-23 seq158 123 2e-23 seq1472 113 4e-20 seq1435 104 2e-17 >seq1495 Length=1971954 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || || || || Sbjct 943534 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 943475 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || ||| ||||| |||||||| || ||||| ||||| || || Sbjct 943474 TGACACCATGGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCA 943415 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||||| |||| ||| | || | || || ||||| Sbjct 943414 GCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCCGCACTCTCTCAGACTACAA 943355 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || ||||| | || ||||||| ||||| Sbjct 943354 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGGGGCGGCAT 943304 >seq158 Length=5104435 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || || || || Sbjct 4734067 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGACGTTGAGCCCAG 4734126 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || ||| ||||| |||||||| || ||||| ||||| || || Sbjct 4734127 TGACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 4734186 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||||| |||| ||| | || | || || ||||| Sbjct 4734187 GCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCCGCACTCTCTCAGACTACAA 4734246 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || ||||| | || ||||||| ||||| Sbjct 4734247 TATCCAGAAAGAGTCCACTCTGCACTTGGTGCTCCGCCTGCGGGGCGGCAT 4734297 >seq1472 Length=2102760 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || ||||| || || || Sbjct 658893 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 658952 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || ||| ||||| |||||||| || ||||| ||||| || || Sbjct 658953 TGACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 659012 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | ||||||||||| |||||||| | || | || || ||||| Sbjct 659013 GCAGCATCTGATTTTTGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCAGACTACAA 659072 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || | || || ||| | || ||||| Sbjct 659073 TATCCAGAGAGACTCCACCCTGCACTTGGT 659102 >seq1435 Length=8499281 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || | Sbjct 996771 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 996830 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || || || || ||||| || || || || Sbjct 996831 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 996890 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 996891 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 996950 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || |||| | ||| || | || || || Sbjct 996951 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTCCGTCTGAGAGGCGGTAT 997000 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || | Sbjct 997455 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 997514 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || || ||||| || || || || Sbjct 997515 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 997574 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 997575 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 997634 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||||||| | || |||| | ||| | |||||||| Sbjct 997635 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTCCGTCTCAGGGGTGGC 997682 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || | Sbjct 996999 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 997058 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || || ||||| || || || || Sbjct 997059 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 997118 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 997119 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 997178 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || |||| | ||| || | || || || Sbjct 997179 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTCCGTCTGAGAGGCGGTAT 997228 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || | Sbjct 997227 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 997286 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || || ||||| || || || || Sbjct 997287 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 997346 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 997347 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 997406 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || |||| | ||| || | || || || Sbjct 997407 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTCCGTCTGAGAGGCGGTAT 997456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906619147840