Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_028758.1 Length=35644 Score E Sequences producing significant alignments: (Bits) Value seq882 98.7 2e-16 >seq882 Length=1497 Score = 98.7 bits (108), Expect = 2e-16 Identities = 229/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 24328 CAGCGGGTGGCAGAATACGAACCCAAAATAAGTTACCTTGACCGAATCCTCCAATCTAAA 24387 |||| | | |||||| | ||| | || || | ||||| || | ||| || ||||| ||| Sbjct 983 CAGCAGATTGCAGAAAATGAATCAAAGATGACATACCTCGATCAAATTCTTCAATCAAAA 1042 Query 24388 GGAACGGTAACCATTACGCAGATTGCCAAAGACTACGAGATGAGTGGGCAGG-CGCTGAA 24446 | || |||||| || | || ||||| || || | | | || ||| || | || Sbjct 1043 GATACAGTAACCGTTTCACAAATTGCGGCTGATTATGGGTTATCTG--CAGTTCGATTAA 1100 Query 24447 CCAGATTCT-ACACGAGGAACGGGTGCAGTATAAGCAAAACGGGCAATGGCTCTTGTATC 24505 | | ||| | | || ||| || ||||| || |||| |||||||| ||||| Sbjct 1101 ATAAAATCTTAAAGGATGAAAAAGTACAGTACAAAGTAAACAATCAATGGCTGCTGTATG 1160 Query 24506 GCAAATATCACGATAAAGGGTACACAAAATCCGAAACCATAGATATCACACGCAGTA--A 24563 ||| |||| |||||||||| |||||||| | || || ||| |||| ||| | | Sbjct 1161 CGAAACATCAAAATAAAGGGTATACAAAATCGCAGACAATTGATGTCAC--GCATTCGGA 1218 Query 24564 CGGCGATCAGGATGTAACCATGAATACACGATGGACGCAAAAAGGGCGCTTATTTATTCA 24623 || | | ||||| ||||||||||| ||||| |||||||| | || ||||| || Sbjct 1219 TGGGAGTAAATCTGTAAAAATGAATACACGCTGGACACAAAAAGGTAGGTTGTTTATCCA 1278 Query 24624 CGAGATATTAAAGAAACGTGGCATCGTGCCTGTGATGGAT 24663 || || |||| ||||| || || | || | |||||| Sbjct 1279 TGATATGTTAACAAAACGAGGAATTATTCCGGAAATGGAT 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113936267988324