Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1626 168 6e-37 >seq1626 Length=1472199 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| || || || ||||| |||||||||| |||||||| | ||| Sbjct 526959 GATCTTCCTCTCATGGCTCTGCCTCCCTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 527018 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || |||||||||||||||| | || ||||| ||| Sbjct 527019 GGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTGGGTGTGCCCTTC 527078 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||| ||||||||||| || Sbjct 527079 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 527119 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 527119 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 527060 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 527059 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 527000 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||| ||||| ||||| Sbjct 526999 CAGAGGGCATGGCAGGGAGGCAGAGCCATGAGAGGAAGATC 526959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250257692240