Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq63 187 2e-42 seq1468 134 1e-26 seq1285 122 7e-23 seq1626 104 2e-17 >seq63 Length=220577 Score = 187 bits (206), Expect = 2e-42 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 |||| | || ||||| | ||||| |||||||| ||| | || | | | |||||||| Sbjct 189655 AAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGCCTACGATCCCAGAAA 189714 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 ||||| ||| || || || |||||||||||||| || ||||| || || ||||| || | Sbjct 189715 ACATGATCACCTTCAGCAAGGACCACGGGGTTGTGGTCCAGCCTGCTTATAAAGACAAGA 189774 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| ||| |||| ||||| || ||| |||| || ||||||||||| || || ||| Sbjct 189775 TAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTGG 189834 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||| ||||| ||||| || | || || || ||||| || |||||||| |||||| Sbjct 189835 AGGATGAGGGGTGTTACAATTGCCTCTTCAATACCTTTGGTTCCGGGAAGATCTCAGGAG 189894 Query 1510 TAGGGTGTCTAACCCT 1525 ||| || || ||||| Sbjct 189895 TAGCCTGCCTTACCCT 189910 >seq1468 Length=8288345 Score = 134 bits (148), Expect = 1e-26 Identities = 287/423 (68%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| || ||||| ||| || |||| | ||||| Sbjct 6925749 AAACAGAATTTGGTGATTATGGGTAGGAAGACCCCGTTCTCCATTCC--TGAAAAGATTC 6925692 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380 | ||||| || |||||| ||| | |||||||||||| | || || | | |||| | Sbjct 6925691 GACCTTTAAAGGACAGAAATAATTTAGTTCTCAGTAGAGAACTCAAGTAACGTCCACAAG 6925632 Query 2381 GGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAAT 2440 | ||||| ||| || | |||||| | ||| | || || ||| | |||||||| Sbjct 6925631 GAGCTCATTTTCTTCCCAAAAGTTTGGATGATGCCCTAACGCTTACTGCACAACCAGAAT 6925572 Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500 ||| | | | |||| | | |||||||| | || || || ||||| || |||| |||| Sbjct 6925571 TAACAAATAAAATGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTACAAGGA-AGCA 6925513 Query 2501 --TTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATG 2558 ||||| | || | | | || ||| | ||||| || |||| |||||||| | Sbjct 6925512 AGGAACAAG-CCAGGCCATCTTAGACTATTTGTGACAAGTATCATGCAGGAATTTGAAAG 6925454 Query 2559 TGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGG 2618 ||| |||| | ||||||| | || | | | |||| || | |||| |||||| Sbjct 6925453 TGAGACATTTCTTCCAGAAACTGATTT----GGAGAAAAACTTCTCCCAGAATATCCAGG 6925398 Query 2619 TGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaa 2678 ||||| |||| || || || || || || ||| ||||||||||| |||||||||| Sbjct 6925397 TGTTCTTTCTGATGTCCAGGAGGAGAAAGGCCTTAAGTACAAATTTGAAGTATATGAAAA 6925338 Query 2679 aaa 2681 || Sbjct 6925337 GAA 6925335 >seq1285 Length=3437426 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 2532053 GTAGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2532112 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 2532113 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 2532172 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 2532173 ATCGCCCTGTGGATGACTGA 2532192 >seq1626 Length=1472199 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || || || Sbjct 527131 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 527072 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| | ||||||||||||| ||||| || ||||| ||||| | Sbjct 527071 ACACCCAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 527012 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || ||||| | | | || || ||||||||| ||||| Sbjct 527011 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGAGCCATG 526970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414465853538188