Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq158 125 5e-24 seq1495 120 2e-22 seq1472 111 1e-19 seq1435 86.0 4e-12 seq1408 82.4 5e-11 >seq158 Length=5104435 Score = 125 bits (138), Expect = 5e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| ||||| ||||| ||| Sbjct 4734068 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGACGTTGAGCCCAGT 4734127 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | |||| | ||||| || || | || || || || Sbjct 4734128 GACACCATTGAGAATGTTAAAGCTAAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCA 4734186 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||||||||| ||||| |||| |||||| | || ||||| Sbjct 4734187 GCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCCGCACTCTCTCAGACTACAA 4734246 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 4734247 TATCCAGAAAGAGTCCAC 4734264 >seq1495 Length=1971954 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| ||||| ||||| ||| Sbjct 943533 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 943474 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | |||| | ||||| || || | || || || || Sbjct 943473 GACACCATGGAGAATGTTAAAGCTAAAA-TCCAAGACAAGGAGGGCATTCCACCTGACCA 943415 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||||||||| ||||| |||| |||||| | || ||||| Sbjct 943414 GCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCCGCACTCTCTCAGACTACAA 943355 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 943354 TATCCAGAAAGAGTCCAC 943337 >seq1472 Length=2102760 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| || || ||||| ||| Sbjct 658894 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 658953 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | |||| | ||||| || || | || || || || Sbjct 658954 GACACCATTGAGAATGTTAAAGCTAAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCA 659012 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || |||||||||||||| |||||||||| |||||| | || ||||| Sbjct 659013 GCAGCATCTGATTTTTGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCAGACTACAA 659072 Query 23790 CATACAAAAAGAGTCCAC 23807 || || | ||| ||||| Sbjct 659073 TATCCAGAGAGACTCCAC 659090 >seq1435 Length=8499281 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 996768 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 996827 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || || || || || | || || || Sbjct 996828 AGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 996887 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | |||||| Sbjct 996888 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 996947 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 996948 AACATCCAGAAAGAGTCGAC 996967 >seq1408 Length=2444343 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | | |||||| ||||| || || || |||||||| ||||| || Sbjct 1486652 AAGATGCAGATTTTCATGACAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCC 1486593 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || | ||||| | || || ||| Sbjct 1486592 TAGGATACAATAGAAAATATAAAGGCCAAGATCCAGGATAGGGAAGGAATTCCTCCTGAT 1486533 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||| ||||||| | || |||| || ||| Sbjct 1486532 CAGCAAAGACTGATCTTTGCTGGCAAGCAAATGGAAGATGGACATGCTTTGTCTGACTAC 1486473 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| ||||| || ||||| | ||| | || || || Sbjct 1486472 AACAATCAAAAGGAATCCACTCTTCATCTTGTGTTGAG 1486435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000673060836