Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1419 172 8e-38 seq1020 127 3e-24 seq1723 116 5e-21 >seq1419 Length=2355583 Score = 172 bits (190), Expect = 8e-38 Identities = 536/818 (66%), Gaps = 25/818 (3%) Strand=Plus/Minus Query 47902 ATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATT 47961 ||| || | | | ||| ||||||||||| |||| | ||| ||| |||| | | || Sbjct 2073978 ATACATATACAAAAAAGTCAAATGGATTTTCTGCTCCAAAAACCTTTCTAAAACTAAGTT 2073919 Query 47962 CTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCA---CAATTCA 48018 ||| || | || ||||| || | ||| || | | | | ||||| | ||||||| Sbjct 2073918 CTGGCATAAACCTGTCTGCTACTATTTCCATGT---TCTGCCTCATTAAAATGCAATTCA 2073862 Query 48019 TTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCAT 48078 |||| ||||| | | ||| |||| || || ||||||||||| || | | | | Sbjct 2073861 TTCCAATAAGCCACAAGGCAAGA-CCTCGGTTAGGAACTCTTGTTCTATCTTAATAACGC 2073803 Query 48079 CCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTA 48138 | ||||| | |||| ||| || ||| || ||||| |||||| |||| Sbjct 2073802 TGATAATTATTTCTTTTACTTTTTAGTCTGCAGGTTTGTATAACAATCATTTAAATATTA 2073743 Query 48139 AACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 48198 || ||||| ||||| || | ||| ||| |||| | | |||||| || |||||||||| Sbjct 2073742 GGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCCAGTAATTCATTGGAAAATGTGA 2073685 Query 48199 GACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGA 48258 |||||| ||| | ||| ||||| | ||| | || ||||| ||| | || Sbjct 2073684 TCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGCGTGAAAG---CAGCAGAG- 2073629 Query 48259 ATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTA 48318 || | || || ||| |||| | | || ||||| ||| | ||||| ||| Sbjct 2073628 --ATTTCCTCCACTGCCCCAAAGCCTACCACTCATTCTCCATAAGTTGCTTCTTTG---- 2073575 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 ||| | || |||| ||||| |||| ||||||| |||||||||| |||||||| | Sbjct 2073574 TCCCCAGTCAGGCCCTGTCAGC---TTTCTCTACACAAAGCATTGTTTCAATAGCATTGA 2073518 Query 48379 AGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 ||| |||| | || |||| |||||||| | |||| || | | ||||| || |||| Sbjct 2073517 AGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAGACTCTATATTT 2073458 Query 48439 CGGAGTGAATATTTTCAATTGCCATC-TGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 | || | | || || | || || | ||||| || | ||||| | |||||||| ||| Sbjct 2073457 CAGAATATAAGTTGTCCA-TGTCACCTTGAAAGCCACAGAAACACATTGCTTCTGTAATC 2073399 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 ||||| | | || |||| | ||| | |||| | | ||||||||| || ||| Sbjct 2073398 TGTACTTTTGGACGAAATTGCGGCACCAGGCTTTCATATCCAGCTCCATCACTTGCTGCA 2073339 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 | || || | | | | ||||| | | || | |||| ||||||| Sbjct 2073338 ACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GGCTTCCAGTGC 2073280 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 | || || || || |||||| || |||||||||||||| || ||||| ||||| | Sbjct 2073279 TGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTGG 2073220 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| | ||| || ||| |||| || || ||||| Sbjct 2073219 TACATCTGCCAAATGCCACGATATTTGAGAGGAAAAAT 2073182 >seq1020 Length=3688603 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 989844 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 989903 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 989904 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 989963 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 989964 TTTCTTACACCAT 989976 Score = 109 bits (120), Expect = 8e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 1006707 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 1006766 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||||||||||| | || || || || || ||||| || || | ||| | |||||| Sbjct 1006767 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 1006825 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 |||||| || ||||||||| || Sbjct 1006826 CATATGTTGTGGTCTTTCAGCC 1006847 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 999552 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 999611 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | |||||| ||||| | || || ||||||| || Sbjct 999612 TCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCAAGGC 999671 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 999672 TCCAGGTAAATAGCAAATGCCCCAGGTCG 999700 >seq1723 Length=12986255 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 6655883 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 6655942 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| |||||||| || || ||||| || || ||||| || Sbjct 6655943 AGCCAGAATATGGATGCAAAAGAGCCAGAAAAAAAGATTCCTTCCACTGCGGCAAAGGC 6656001 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| | | |||| ||| ||| | || ||||| ||||| Sbjct 6654475 GTTCATTTAGAAGTCAGCATCCAGGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCC 6654534 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| || Sbjct 6654535 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 6654594 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 6654595 ATTCTCCATAAAGTCAAATGGATT 6654618 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| || |||||||||||||| || ||||| ||||| |||||||| | ||| ||||||| Sbjct 6658926 TACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCACG 6658985 Query 48698 GTATTGGATTGGGAAAATAACAAA 48721 ||||| ||| ||||| || ||||| Sbjct 6658986 GTATTCGATGGGGAAGATGACAAA 6659009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649983158880