Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1419 156 6e-33 seq1020 132 7e-26 seq1723 107 3e-18 seq3 107 3e-18 >seq1419 Length=2355583 Score = 156 bits (172), Expect = 6e-33 Identities = 468/707 (66%), Gaps = 23/707 (3%) Strand=Plus/Minus Query 46501 CAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTG 46560 ||||||||||| || || | | ||| |||| || || ||||||||||| || | Sbjct 2073868 CAATTCATTCCAATAAGCCACAAGGCAAGA-CCTCGGTTAGGAACTCTTGTTCTATCTTA 2073810 Query 46561 ACAGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTT 46619 | | | | |||| |||| | ||||| ||| || ||| | | ||| ||| Sbjct 2073809 ATAACG-CTGATAATTATTTCTTTTACTTTTTAGTCTGCAGGTTTGTATAACAATCATTT 2073751 Query 46620 AAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGA 46679 ||| |||| || ||||| ||||| || | ||| || |||| | | |||||| || || Sbjct 2073750 AAATATTAGGCAGGCAAAGTCACAGTGTAAACCT-CA-CTCTGCCCAGTAATTCATTGGA 2073693 Query 46680 AAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATA-TAGCCGCGAAAGATC 46738 |||||||| | ||||||| ||| | || ||||| | ||| |||| | ||||| Sbjct 2073692 AAATGTGATCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGC-GTGAAAG--- 2073637 Query 46739 CAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT 46798 ||| | ||| | | || || ||| | || | || | || ||||| ||| | || | Sbjct 2073636 CAGCAGAGATTT---CCTCCACTGCCCCAAAGCCTACCACTCATTCTCCATAAGTTGCTT 2073580 Query 46799 CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 | || | || | | |||| ||||| ||||| ||||||| |||||||||| | Sbjct 2073579 CTTTGT----CCCCAGTCAGGCCCTGTCAGC---TTTCTCTACACAAAGCATTGTTTCAA 2073527 Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 ||||||| |||| |||| | || | | |||||||| | || || | | |||| Sbjct 2073526 TAGCATTGAAGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAGAC 2073467 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCT-GAAATCCGTAAAAACATCTTGCT 46977 | || ||||| |||| | ||| || || | || || |||| || | ||||| ||||| Sbjct 2073466 TCTATATTTCAGAATATAAGTTGTCCAT-GTCACCTTGAAAGCCACAGAAACACATTGCT 2073408 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 || ||||||||||| | || || |||| | || | |||| | ||||||| Sbjct 2073407 TCTGTAATCTGTACTTTTGGACGAAATTGCGGCACCAGGCTTTCATATCCAGCTCCATCA 2073348 Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA 47097 || || |||| || |||| | | | ||||| | | || | | |||| Sbjct 2073347 CTTGCTGCAACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GGC 2073289 Query 47098 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCT 47157 ||||||| | || || || || |||||| || ||||||||||| || || ||||| Sbjct 2073288 TTCCAGTGCTGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTCA 2073229 Query 47158 GCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 ||||| | ||||| | ||| || ||||||||| || |||||||| Sbjct 2073228 GCTTTCTGGTACATCTGCCAAATGCCACGATATTTGAGAGGAAAAAT 2073182 >seq1020 Length=3688603 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 989844 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 989903 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 989904 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 989963 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 989964 TTTCTTACACCAT 989976 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | ||| || || || || || || || || || Sbjct 1011585 CTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGATA 1011644 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 1011645 GCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 1011704 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||||| || || | |||| ||||| || |||||||||| Sbjct 1011705 TCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 1011750 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 1006707 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 1006766 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||||||| | || || ||||| || || ||||| || |||| || | |||||| Sbjct 1006767 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 1006825 Query 77113 CATATGCTGAGGTCGTTC 77130 |||||| || |||| ||| Sbjct 1006826 CATATGTTGTGGTCTTTC 1006843 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| || | || |||| | | || || || || || || || Sbjct 994676 GAGCCCTCATAGGTTTCATATGGGCCATCCTCCTTGGACAGGTCACAGCTGGCTTCCAAG 994735 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| ||||| || || | |||||| || || || || |||| ||| Sbjct 994736 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCA 994795 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | |||||||| |||||||| || || || || ||||| ||||| || Sbjct 994796 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGG 994855 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 994856 CGATGGCGTTTATTTGA 994872 >seq1723 Length=12986255 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 6655883 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 6655942 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| |||||||| || || ||||| || || || || || Sbjct 6655943 AGCCAGAATATGGATGCAAAAGAGCCAGAAAAAAAGATTCCTTCCACTGCGGCAAAGGCT 6656002 Query 46774 ACAA 46777 |||| Sbjct 6656003 ACAA 6656006 >seq3 Length=5570360 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 3108480 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 3108421 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 3108420 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3108361 Query 46772 CGAC 46775 | || Sbjct 3108360 CCAC 3108357 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| ||||| | Sbjct 3100555 TACCTCTTCCGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCGGG 3100496 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 3100495 GTACTGGATTGGAAAGATGACAAATC 3100470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712915088389440