Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq1626 84.2 8e-12 >seq1626 Length=1472199 Score = 84.2 bits (92), Expect = 8e-12 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || ||||||||||| | || | ||| ||||| || | |||| ||| |||| || Sbjct 526971 ATGGCTCTGCCTCCCTGCCATGCCCTCTGCCAGTTCTACGT-GGTGAACGGTGAGCTGTC 527029 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| |||| ||| | || | |||||| | |||| || || || ||||||||||| Sbjct 527030 CTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTGGGTGTGCCCTTCAACATTGCCAG 527089 Query 52229 CTATTCCTTGCTGAC 52243 ||| || |||| || Sbjct 527090 CTACGCCCTGCTCAC 527104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190091108235870