Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1690 165 1e-35 seq1523 111 2e-19 >seq1690 Length=7296525 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| | || ||| |||||||||||| || ||||| || ||||| ||||| Sbjct 2274628 GTCTGGAACAAGCGTTCATCATCCCATTCTGGATGCTCCTGTTTGAGGACATCACACACT 2274569 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 2274568 CTGTTGTGTTCCCGCAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGACCAAAG 2274509 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || || || | | || || |||||||| | | Sbjct 2274508 ACCTCCTGCCCCACAGCAAACCGCAGGTGCTCAGGAATATGAGGCGGGTAGATCATCTCC 2274449 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| ||||||||| | ||| ||||||| || || | ||| |||| Sbjct 2274448 ACCTGAGTGTCTTTGACTGTGGGCGGATACACCTCGCCATTAATGATCT 2274400 Score = 141 bits (156), Expect = 1e-28 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| || | || ||||| ||||| ||||| | |||| ||||||||||| | Sbjct 2276194 GAACACTGAAGGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 2276135 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || |||||||| |||||||| Sbjct 2276134 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGTTTCCAGTAGT 2276075 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || ||||| || ||| || ||||| | |||||| || ||||| | || | Sbjct 2276074 CAGGAGAACAGATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCCCCAAGTTCTA 2276015 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| ||||||||||| | || || ||||||||||||| | | | |||| Sbjct 2276014 CCATGGTCTCCCCGAAGATGGCATCTGGGCGAGGCTTTTCCACCAGAAGGGCAGGATACA 2275955 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| || || || || | || ||||| || ||||| |||| Sbjct 2275954 GCTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 2275895 Query 8583 CTG 8585 ||| Sbjct 2275894 CTG 2275892 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||||||||| || ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 2273508 TCTTACCCCGTGACCCAGGCCTTTGGTGAAAGCTGGACCTCGCTTAGGATCTGTCTTGAA 2273449 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| ||||||| |||||||| | || ||||||||||| || Sbjct 2273448 AAACTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGGGGTC 2273389 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | || ||| ||||||||||| | | | ||| || |||| Sbjct 2273388 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 2273329 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 2273328 TTTCTTCCCTGAAAAATGAGAA 2273307 >seq1523 Length=1859086 Score = 111 bits (122), Expect = 2e-19 Identities = 207/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8281 GGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAAT 8340 |||||| ||||| | | | ||||| | ||| |||| ||||| || || | Sbjct 1498305 GGGAACACGGAAGGAAACATAGGGACAAGCGTTGGTGTTGAGGCAGACCAGCTTCTTCAG 1498246 Query 8341 AGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTA 8400 || || ||||||| || ||| |||| || || || || || || || |||||||| Sbjct 1498245 CGTAGCCGTCTTGACAATGTTGAAGCCCATTTCACCACCAAATGTACTCGGTTTCCAGTA 1498186 Query 8401 CCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTC 8460 | |||| || |||||| || | | |||||| ||||||||||| ||||| || | || Sbjct 1498185 CTCCGGAGAACAGATGGGATTGCCTAGGAGGCCCTTGAGGGAGAAGGGAGCTCCAATTTC 1498126 Query 8461 GAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTA 8520 | || ||||| || ||||||| ||| ||| || ||| || | | | || | ||| Sbjct 1498125 TATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCAGGGTA 1498066 Query 8521 CAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTC 8580 | ||||| || |||| |||||| || || || | || || || |||||||| || Sbjct 1498065 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 1498006 Query 8581 TCCT 8584 |||| Sbjct 1498005 TCCT 1498002 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 1487504 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 1487447 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 1487446 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 1487387 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| |||||| Sbjct 1487386 CAGGTATGAACTTCCTCC 1487369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716857381599680