Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2 426 1e-114 seq20 172 4e-38 seq14 123 2e-23 seq8 82.4 6e-11 >seq2 Length=120857687 Score = 426 bits (472), Expect = 1e-114 Identities = 440/578 (76%), Gaps = 16/578 (3%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| ||||||||||||||||||||||||| | |||| Sbjct 33212611 AAAACACCTTCACATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAAGGCCTTTC 33212670 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| ||||||||||| |||||||||| | |||||| ||||| | | Sbjct 33212671 TCCTCCTGGACATCAGAAAGAACACCTGGATATTCTGGGAGAAGTTT----TTCTCCAAA 33212726 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 ||| |||||||||||| ||||||| |||||| || |||||||| || |||||||| ||| Sbjct 33212727 TCAGTTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATGATACTTGTCACAAATAGT 33212786 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||||| || ||| | || | ||||| ||||| |||||||| ||||| | |||||| Sbjct 33212787 CTAAGATGGCCTGGCTTGTTCCTTGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAA 33212846 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| | |||||||| ||||||||| ||| | |||||| ||| |||||||| ||| Sbjct 33212847 ACCATGTCCATTTTATTTGTTAATTCTGGTTGTGCAGTAAGTGTTAGGGCATCATCCAAA 33212906 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || | | ||||||||||| |||||| | | ||| ||||| | |||||||| | | Sbjct 33212907 CTTTTGGGAAGAAAATGAGCTCCTTGTGGACGTTACTTGAGTTCTCTACTGAGAACTAAA 33212966 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||| ||||| | |||||||| || |||| |||||||| |||||| ||||| ||||| Sbjct 33212967 TTATTTCTGTCCTTTAAAGGTCGAATCTTTTCAGGAATGGAGAACGGGGTCTTCCTACCC 33213026 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGG------ 4428 |||||||| |||||||||||| || || ||||| || || |||||||||||| Sbjct 33213027 ATAATCACCAAATTCTGTTTACCTTCTAATGAAGAGGTTGTGGTCATTCTTTGGAACTAC 33213086 Query 4429 ------AAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCA 4482 || | || || || ||| | ||| | |||| ||||| || || | ||||| Sbjct 33213087 GAATTCAACTACTTGAATTCGTTCCTGAGTGTGGGCCGAGGCAGGTCGCCCTTCTTGCCC 33213146 Query 4483 ATGCCCATGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520 |||||||| || || | || | |||| ||||||| Sbjct 33213147 ATGCCCATATTCTGGGACACGACGACAACTTAGTTTAG 33213184 >seq20 Length=64166202 Score = 172 bits (190), Expect = 4e-38 Identities = 173/223 (78%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 |||||||| || ||||| |||||||| || | ||| ||||||||||| ||| || || Sbjct 49866181 ACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGCATCTTCTCCAGCTGGAAGGAG 49866122 Query 27012 TTAGGGCAGGGTTGA--TGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069 | |||||| ||| | |||| ||||| || || |||||||| ||||| ||||| | Sbjct 49866121 TGGGGGCAGTTCTGAGATTCCCT--GCGCAGGACCAGGATCTCTTGCTGGATGGGGACGG 49866064 Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129 ||||||||||| ||||||| ||||| || ||||| ||||| || | || ||| ||||| | Sbjct 49866063 AGTTCATGTGGAAGTCTACCTTCCCTTCGGCATTGACACAGCCCAGGTGGCGGCACTTCG 49866004 Query 27130 CTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 | ||||| ||||||||||| ||||| || | || || ||||| Sbjct 49866003 CCTCCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCGTTGCG 49865961 >seq14 Length=93904894 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||||||||||||||||| Sbjct 85194806 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 85194747 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||| ||| |||||||| ||||| || || | ||||||||||| |||||| Sbjct 85194746 TGCTCAAGAAGTGATAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 85194687 Query 4285 AGCTCC 4290 | ||| Sbjct 85194686 GGTTCC 85194681 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | ||||| ||||| ||||||||||| Sbjct 85181030 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAACGGCCGATTCTTCTCAGG 85180971 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || |||||||| ||||| ||||||||||||| |||||||| ||| || Sbjct 85180970 GATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 85180922 Score = 114 bits (126), Expect = 9e-21 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 85197129 AAGTTTATATTTTTCAAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 85197070 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||||||| |||||| || ||| | |||| ||||| || Sbjct 85197069 GATCCTTGTCACAAACAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTT 85197019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||| |||||||||||||||||||||||||| | ||| || || || | || Sbjct 85200383 ATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGATAT 85200324 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||||||||||| ||| ||| Sbjct 85200323 CAGAAAGAACACCTGGGTAT 85200304 >seq8 Length=94057673 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| || || || || || | ||| |||| Sbjct 41185539 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCGTAAACTGGGCCTAAATCCCCTT 41185480 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | | || || || | || || || || || ||||| |||||||| | Sbjct 41185479 CTTCTCTGGCGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGA 41185420 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 41185419 TTTTCACTCC 41185410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361208770707887