Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq16 295 8e-75 seq15 250 3e-61 seq3 163 3e-35 seq5 159 4e-34 seq32 134 2e-26 seq10 114 2e-20 >seq16 Length=87365405 Score = 295 bits (326), Expect = 8e-75 Identities = 268/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||||||||| | | | ||| | ||||| |||||||||||||| Sbjct 37773357 AGCAGGGCTTCGATGTCGGGCTCAATATCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 37773298 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| | ||||||| |||||||||||||||||||| || ||||||||| Sbjct 37773297 ACAGGCACACCGTCCGGGCCCACCAGAAACTTCTCGAAGTTCCAGGCGACATCGTTGCGG 37773238 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || |||||| ||| ||||| | |||||| || Sbjct 37773237 CACACTGGAGACCAGGTGATGAACTTAGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 37773178 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| ||||| || ||||||||||||||||| || ||| ||||| || ||| Sbjct 37773177 GGGGCAGGCAGAGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCCTGCGCACCATTCACC 37773118 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| ||||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 37773117 TCGCACTTCTCAAAGAGTGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 37773058 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | |||| |||||| ||||| Sbjct 37773057 AGGGAATTCAGGATCTCTTCGTTCTTGGCGTTCTCCTG 37773020 Score = 203 bits (224), Expect = 4e-47 Identities = 195/250 (78%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| ||||| || || | || |||| Sbjct 37772747 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCGCGGGGCCCAAGGC 37772688 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||||| Sbjct 37772687 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCTA 37772628 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| ||| || | | |||| | ||||| || || || |||| Sbjct 37772627 CATTCTCAATGAGCAGCACCTTGCCACGCAGGGAGCCCAGGCTCAAGGGCTCCCCGCCGG 37772568 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | |||||| || |||||||||||||| || | | || || |||||||| || | Sbjct 37772567 CCAGCGGGCGCGCAGAGAAGGCGTACACCGAGCGCCGGGCGGCAGCCGCAAGCTGAGCAG 37772508 Query 83631 CGTACTTGGC 83640 || || |||| Sbjct 37772507 CGCACATGGC 37772498 >seq15 Length=91571448 Score = 250 bits (276), Expect = 3e-61 Identities = 365/511 (71%), Gaps = 30/511 (6%) Strand=Plus/Plus Query 83105 CTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCC 83164 || ||||||||||||||| ||||| ||||||| ||||||||||||||||||||| Sbjct 70385698 CTCTACCTGCGCACGGGCACACCGTCCAGGCCCACCAGGAACTTCTCGAAGTTCCAGGCG 70385757 Query 83165 ACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGC-TGGGGGTCGCTCACGAGCGTGCT 83223 ||||||| |||| |||| ||| |||||| |||| | |||||| | || |||||| | | Sbjct 70385758 ACGTCGTCGCGGTACACGGGAAACCAGGTGATGAACGCGGGGGTTGGTCGCGAGCGCGGT 70385817 Query 83224 CATGTCGTCGCTAGG-CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 ||| || | || ||| ||||| ||||| || |||| |||||||||| | |||||| Sbjct 70385818 GGCGTCTTCACGGGGTCGCGGGCAGAGCCTCCCGCAGGAGGGCGAAGAGCCGGTGTGCCT 70385877 Query 83283 TTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAG 83342 || ||||| |||||| |||||| ||| | | ||||| | || ||| ||| || | Sbjct 70385878 GCGCGCCGTTCTCCTCGCGCTTCTCCAAGTGAGTGAAGTTGGCCTGGAACCCGCCGCCGG 70385937 Query 83343 GACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGC----------------- 83385 | |||| || || |||||| || ||||| | | || ||| Sbjct 70385938 GTCGGAAGTACTGGAGGGAATTCAGGATCTTTTCGTGCTTGGCCGGATGCCAAGACCAGG 70385997 Query 83386 --GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCT 83443 ||| ||||| | | ||||||||| ||| |||| || ||||| ||||| ||| | || Sbjct 70385998 ATGTTCTCCTGAGGCCGGAACTGGTTGCAC-GGAAGCCGAGCACGACCAGGCCCTG-GC- 70386054 Query 83444 CCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGG 83503 || ||||||||||||||| |||||| ||| ||||| || ||||||| | ||||| || Sbjct 70386055 CCGAGGCGCCGCTGCAGCCCGTTCACCTGGGTGTAGCCCTGGACCGTTGTGCCTCAAAGC 70386114 Query 83504 GACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCT 83563 || || ||||| ||| ||||| ||| | |||| || |||| | |||| | || | Sbjct 70386115 GATGCCACGTTGTCGCCGAGCAGCACCTTGTCCCG-CAGGAGCCCAGGCTCCCGGGCCCC 70386173 Query 83564 CCTCCGGTAATCGGGCGTGCTGAGAAGGCGT 83594 |||||| ||||| ||| | |||||||| Sbjct 70386174 GCTCCGG----CGGGC-TGCAGCGAAGGCGT 70386199 >seq3 Length=119479920 Score = 163 bits (180), Expect = 3e-35 Identities = 234/325 (72%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||| | || | ||||||||||| | | | |||| | ||| || ||||||| |||||| Sbjct 80930699 AGCAGGACTTCCACGTCGGGCTCCATGTCGAAGGTCAGACAGTGGCGGCTGTATCTGCGC 80930758 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || ||| | ||||| | ||||||||||||||||| | | || | ||||| Sbjct 80930759 ACAGGCACGCGGTCCGGGCCCACTAGGAACTTCTCGAAGTTCCCGATGATGTTGATGCGG 80930818 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||| ||||| | |||| || ||||||| ||| ||||| ||| || | | Sbjct 80930819 CACACTGGGGACCAAGTGATGAACTTGGGGTCGGTCATGAGCGCAGCGGCGTCATCACCA 80930878 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||| | ||||| | ||||||||||||||| | |||| | || || || ||| Sbjct 80930879 -GCACGGGCTGAGCCTCCTGCAGGAAGGCGAAGAGCTG-TGTG-CAGCGCGCCATTCACC 80930935 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | | | ||| |||||| | || || |||| ||| ||| || || ||||||| ||| Sbjct 80930936 TTGAA---CTCAAAGAGCGTGAAATTGGGCTTGAACCCGCCTCCGGGTCGGACGTACTTG 80930992 Query 83357 AGGGAAGGCAAGATCTCGGCATTCT 83381 ||| || | |||||| | |||| Sbjct 80930993 AGGCAATTTAGGATCTCTTCGTTCT 80931017 >seq5 Length=99680356 Score = 159 bits (176), Expect = 4e-34 Identities = 320/476 (67%), Gaps = 34/476 (7%) Strand=Plus/Plus Query 83097 AGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGT 83156 ||| | ||||| |||||||||| ||| || || | | ||||| |||||||||||||| Sbjct 90489611 AGCAGCGGCTGCACCTGCGCACAGGCACACCATCCGGGCTCACCAGGAACTTCTCGAAGT 90489670 Query 83157 TCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGA 83216 | ||||| || | |||| ||||||||||||||||| |||| || ||||||| ||| | Sbjct 90489671 TTCAGGCGACACCTTTGCAGCACACTGGAGACCAGGTGATGAACTTGGGGTCGGTCAGCA 90489730 Query 83217 GCGTGCTCA--TGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGG 83274 |||| | || ||| || || || |||||| Sbjct 90489731 --GTGCAGAGTCGTTGTCACTGGGTGCAGGCAGG-------------------------- 90489762 Query 83275 ATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCC 83334 || ||| || || | ||| ||| ||||| |||||| | ||| ||| ||| || Sbjct 90489763 -TGCGCCTGCGCGCCACTCCCCTTGCAGTTCTCAAAGAGCTTGTTGTTGGGCAAGAACCC 90489821 Query 83335 GTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | || ||||| |||| ||| || || |||||| | |||| |||||| | | | Sbjct 90489822 GCCGCCTACTGGGACGAGCTTGAGGAAATTCAGGATCTCTTCGTTCTTGGCGTTCTGCGG 90489881 Query 83395 GTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCG 83454 || |||||| || | | | ||| |||||||| ||||| ||||| | || |||| | | Sbjct 90489882 ATGCCCGAACGGGGTGCGCTAGAAGCCAAGCACCACCAGGCCCCGGGGGCCGAGGCACTG 90489941 Query 83455 CTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCG-TGCTACCTCAGAGGGACGCTACGT 83513 | ||||| |||||| || ||| | | || ||| | |||| |||||||| | |||| || Sbjct 90489942 CAGCAGCCCGTTCACTTGGGTGGAGTTCCAGACGGTTGCT-CCTCAGAGCTAGGCTA-GT 90489999 Query 83514 TCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCG 83569 |||| |||||| ||| | || | | |||| |||||| |||| || || ||| Sbjct 90490000 TCTCAGTGAGCAGCACCTCATCTCGCAGGGAGCCCAAGCTCGCAGGCTCCCCGCCG 90490055 >seq32 Length=124114077 Score = 134 bits (148), Expect = 2e-26 Identities = 240/342 (70%), Gaps = 9/342 (3%) Strand=Plus/Minus Query 83136 CCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAA 83195 |||||| ||| ||||| ||||||||||| | | | |||| ||||||| ||| ||||| | Sbjct 70111648 CCACCAGGAAGTTCTCAAAGTTCCAGGCAAAGCCATTGCAGCACACTAGAGGCCAGGTGA 70111589 Query 83196 TGAGCTGGGGGTCGCTCACGAGC---GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCT 83252 |||||| |||||| ||| |||| ||| ||| || || | ||| ||||| |||| Sbjct 70111588 TGAGCTTGGGGTCAATCAAGAGCTCAGTG-GCAT-TC-TCCATGGGCATAGGCAGAGCCT 70111532 Query 83253 CTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTC-GAAG 83311 | | ||| || | || ||| | | ||| | || || ||||| |||| ||| |||| Sbjct 70111531 CCCACAGGGAGACAAAAAGCAGGTATGCTTGGGTGCCATTCACCTCACACTGCTCAGAAG 70111472 Query 83312 AGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATC 83371 || | ||||| ||||| | || | ||||| ||| || ||| || ||| || ||| Sbjct 70111471 AGAGTGAAGTTGGGCTCACATCCTCTGCCAGGTTGGATGTACTTGAGAGAATTCAGGATT 70111412 Query 83372 TCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACC 83431 || |||| ||| || ||||| || | ||||||||| || || || | || || ||| Sbjct 70111411 TCTTAGTTCTTGGCATTCTCCTGATGCCTGAACTGGTTGCATGGAAAGCAGAGTACAACC 70111352 Query 83432 AGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTC-GTTCATCTG 83472 | ||| | | || |||| | ||| ||||| |||||| || Sbjct 70111351 TGGCCCTGTG-GCCCAGGCACTGCTAGAGCTCAGTTCATTTG 70111311 >seq10 Length=83980604 Score = 114 bits (126), Expect = 2e-20 Identities = 202/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 57151695 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 57151637 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 57151636 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 57151577 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| ||| || |||||| ||| | | |||| ||||| Sbjct 57151576 GCGGCTCCCTGGGCAAGAAGCAA-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 57151518 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| || || |||| | |||| ||| Sbjct 57151517 GTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGTGTCTGGACCCTGGAGTTTGTGGGC 57151458 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||| | | |||||| || |||||| Sbjct 57151457 AAACTGGACGAGCGCTGCCGGCGCAG--GGACACGGAGCAGAGGCGC 57151413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608723462815480