Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8 161 1e-34 seq11 149 6e-31 seq9 120 3e-22 seq15 87.8 2e-12 >seq8 Length=94057673 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || ||||||||| | || || || ||| | Sbjct 24467632 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24467573 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 24467572 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 24467514 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| ||| || || |||||||| || | ||||||||| |||||||| Sbjct 24467513 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24467454 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || | || ||||| || || ||||||||||||| || Sbjct 24467453 CATCCAGAAAGAATCTACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 24467406 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || ||||| || ||||||||| | || || || ||| Sbjct 24468545 AATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 24468486 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| |||||| || || | ||||| |||||||||||| | |||| Sbjct 24468485 CGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 24468427 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | ||||||| ||| || || |||||||| || | ||||||||| ||||||| Sbjct 24468426 AGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACA 24468367 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| |||| ||||| || || |||| Sbjct 24468366 ACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCG 24468330 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || ||||||||| | || || || ||| | Sbjct 24468316 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24468257 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 24468256 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 24468198 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| ||| || || |||||||| || | ||||||||| |||||||| Sbjct 24468197 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24468138 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| ||||| || || |||| Sbjct 24468137 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCG 24468102 Score = 152 bits (168), Expect = 5e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || ||||||||| | || || || ||| | Sbjct 24467860 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24467801 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || |||||||||||| | ||||| Sbjct 24467800 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 24467742 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| ||| || || |||||||| || | ||||||||| |||||||| Sbjct 24467741 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24467682 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| ||||| || || |||| Sbjct 24467681 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCG 24467646 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| | || || || ||| | Sbjct 24468088 ATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACGATCACCCTGGAGGTGGAGCCCAGC 24468029 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 24468028 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 24467970 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| ||| || || |||||||| || | ||||||||| |||||||| Sbjct 24467969 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24467910 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| ||||| || || |||| Sbjct 24467909 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCG 24467874 >seq11 Length=61308211 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| | Sbjct 57863688 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863629 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || |||||||||||| | ||||| Sbjct 57863628 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 57863570 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 57863569 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 57863510 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| ||||| || || |||| Sbjct 57863509 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCG 57863474 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 57863919 AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 57863860 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | |||| | |||| || || | || || |||||||||||| | || Sbjct 57863859 AGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGA 57863801 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| || | ||||| || ||| || Sbjct 57863800 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTA 57863741 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| ||| | || ||||| || ||| |||| |||| ||||| Sbjct 57863740 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGTCTGAGAGGCGG 57863690 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| | Sbjct 57863460 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863401 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || |||||||||||| | |||||| Sbjct 57863400 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 57863341 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | ||||| || || |||||| Sbjct 57863340 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 57863281 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || ||||| || ||| | || | ||||| ||| Sbjct 57863280 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTCCGTCTCAGGGGTGGC 57863233 >seq9 Length=83561422 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| | || || || ||| Sbjct 63528142 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 63528201 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | ||||| | ||||||||||||||||| | |||||| Sbjct 63528202 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG 63528261 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || || | || |||||||||||||| || | ||||| ||| |||||||| Sbjct 63528262 CAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAT 63528321 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||| || |||| ||||| | ||| | ||| Sbjct 63528322 ATCCAGAGAGACTCCACCCTGCACTTGGTGCTCCGC 63528357 >seq15 Length=91571448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| | || ||||| ||||| || || || |||||||| |||||| || Sbjct 83360831 GAGCCGCTGCTGAGAGAAAACCCTCGCCGCTTTGTCATCTTCCCCATCGAATACCATGAT 83360772 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| ||||| || || || ||||| || || ||||| | |||||||| Sbjct 83360771 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGT 83360719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515157135407120