Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq10 84.2 4e-11 >seq10 Length=83980604 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 52053 TCAGGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTA 52112 ||| || ||||| ||||| ||| | ||||| | |||||||| ||||||||| | || || Sbjct 34152956 TCAAGCTTTTTTCGGAGCCCAGATGAATTCCCTCATCCATGTGATTATGTACTCCTACTA 34152897 Query 52113 TGGTATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTT 52170 || | || | ||| || ||| ||||||| |||||| ||||||||||| || || Sbjct 34152896 CGGCTTAAGTGCGTTTGGCCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTG 34152839 Query 52171 ACTATAATGCAGTTGGT 52187 ||||| ||||| |||| Sbjct 34152838 ACTATGTTGCAGCTGGT 34152822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923085589405480