Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1 1752 0.0 seq23 120 2e-22 seq20 82.4 5e-11 >seq1 Length=185838109 Score = 1752 bits (1942), Expect = 0.0 Identities = 1375/1648 (83%), Gaps = 41/1648 (2%) Strand=Plus/Minus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || |||||||| ||||||||||||| | |||||| |||| || || ||| ||||||| Sbjct 132091476 TCCTAGGCAGGTCTTGACTGAGGATTTGTGTCTAAAGAA---ATAGATTTTTGCCATCAC 132091420 Query 107200 TCTGGAGTTGAACTTGATGTTCT--------------GGATTAGTTTGTAATTAAAGGCA 107245 | |||||||||||||||||||| || ||||||||||| | |||||| Sbjct 132091419 TTTGGAGTTGAACTTGATGTTCCTATGAGCGTGTTCAGGGTTAGTTTGTAACTGAAGGCA 132091360 Query 107246 TTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTC 107305 ||||||||||||||||||| ||||||||| |||| | |||||| |||| || | ||| Sbjct 132091359 TTTTGTTCTGTCCAAGGAT-TCCTCCTCCTCCTTCCGTGTGCCTAAACCCTGCCAGTCTG 132091301 Query 107306 CCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGC 107365 | || ||||||||||| | |||||||||||| || | |||| | | ||||| ||| Sbjct 132091300 CTATGCCATGAAGATGCTTCGGTGGAAGAAGACACTCTTCCGGCAGCGTTGTCTGTTGGC 132091241 Query 107366 CCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATG 107425 ||||||||||||||||||||||||| ||||| |||||||| |||| ||||| || ||||| Sbjct 132091240 CCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTGAGATTTTCTCTCAGATTGAAATG 132091181 Query 107426 TGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACAT 107485 ||| | ||||| ||| |||||||||||||||||| ||||| |||| |||| |||| || Sbjct 132091180 TGACTTTAATTCCCTGGGTCTGGAGTCCAGGGACTTTCAGAGCCAGCGCTGTCGGGATAT 132091121 Query 107486 GTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCG 107545 |||||||| ||||||||||||||||| |||| ||||||||||||||||||||| || Sbjct 132091120 CTTGTACAAGGCCCTGAAGCTGCCAGCAAGGAGACCCATCAACTGTTCTGGGATCATCCG 132091061 Query 107546 AGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCG 107605 ||||||| |||| ||| |||| ||||| ||||| ||||| |||||| ||||| Sbjct 132091060 TGGGGACCGCACAGCATTGGGAGAGGCTCTCCTGGACAAGCTGGACACGAAGAAGAAGCG 132091001 Query 107606 GTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGC 107665 | |||| |||| | |||| | ||||||||||| |||||||||||||| | ||| ||||| Sbjct 132091000 GGAGCCTTTCACAGACACCGACTACCTCAACATGACCAGAGACTGTGAACACTTTAAGGC 132090941 Query 107666 CCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTA 107725 | |||||||||||||||||||||||||||| || |||||| |||| ||||| ||||| || Sbjct 132090940 CGAAAGGAAGTTCATACAGTTCCCACTGAGCAAGGAAGAGTTAGATTTCCCTATTGCATA 132090881 Query 107726 CTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGC 107785 ||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 132090880 CTCTATGGTGGTCCATGAGAAGATTGAAAACTTTGAAAGGCTTCTGCGAGCTGTGTATGC 132090821 Query 107786 CCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGC 107845 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| Sbjct 132090820 CCCTCAGAACATATACTGTATCCACGTGGATGAGAAGTCCCCAGAGACTTTCAAGGAGGC 132090761 Query 107846 GGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGT 107905 ||||| || |||||||| |||||||| ||||||||| |||||||||||||||| | ||| Sbjct 132090760 AGTCAAAGCAATTATTTCATGCTTCCCTAATGTCTTCTTGGCCAGTAAGTTGGTTCGGGT 132090701 Query 107906 GGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA 107965 ||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| Sbjct 132090700 GGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACTTGAACTGCATGGAAGACTTGCTCCG 132090641 Query 107966 GAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGAC 108025 ||||||||| |||||||| ||||| || |||||||||||||||||||| || |||||||| Sbjct 132090640 GAGCTCAGTTCCATGGAAATACTTCCTAAATACATGCGGGACAGACTTTCCTATAAAGAC 132090581 Query 108026 CAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA 108085 |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 132090580 CAATGCTGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGAGTCAGA 132090521 Query 108086 GGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACT 108145 | ||||| |||||| ||||||| |||||||||||| | |||||| |||||||||||||| Sbjct 132090520 GATACCTACTGAGTACAAAAAATCTCGCTGGAAATATCACTATGAAGTGACAGACACACT 132090461 Query 108146 GTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAA 108205 | || ||||||| |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 132090460 GCACAGAACCAGCAGAATGAAGGACCCTCCTCCTGACAATTTACCTATGTTCACAGGTAA 132090401 Query 108206 TGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCA 108265 ||||||| ||||||| |||||| |||| | ||||||||||||| ||||| ||||| | Sbjct 132090400 TGCCTATATTGTGGCTTCTCGAAGCTTTATTGAACATGTCTTAGAGAACCCCAAATCACG 132090341 Query 108266 AAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT 108325 | ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 132090340 ACAGCTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAACACCTCTGGGCCACCCT 132090281 Query 108326 TCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGA 108385 ||||||||| || |||||||||||||||||||| |||||||||| |||||||||||| Sbjct 132090280 TCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTATCACCCCAAGTTTCACATCTCAGA 132090221 Query 108386 CATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445 |||||||||||| || ||||| |||||||||||| ||| |||||| | |||| ||||| Sbjct 132090220 CATGACTGCCATTGCTAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACATCAGTATGGG 132090161 Query 108446 GGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGG 108505 ||| ||||||| ||| |||||||||||||| | | |||| ||||| ||||| || | || Sbjct 132090160 GGCACCTTATGAACCTTGCTCTGGAATCCACCAGCGGGCTATCTGTATTTATGGAACTGG 132090101 Query 108506 GGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGT 108565 |||||| |||||||| |||||||||||||| ||||| |||||||||||||| | ||| Sbjct 132090100 AGACCTGCCTTGGATTCTTCAGAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGT 132090041 Query 108566 GGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGAC 108625 ||||||||| || || |||||||||||||||||| ||||| ||||||| |||| ||||| Sbjct 132090040 GGATGATAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGGCTGTCTACGGGAC 132089981 Query 108626 TGAACTTTGAGCTGCACTGTG---------------------GGCCAGGGAC-TGTGCCA 108663 |||||| |||| | | ||||| || |||| || ||||| | Sbjct 132089980 TGAACTCTGAGATACCCTGTGAGAGAATTGCTACCTGGGTGAGGGCAGGAACATGTGCAA 132089921 Query 108664 ACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGG 108723 |||||||||| || | || || |||| ||||||| || |||||| |||||||||||| Sbjct 132089920 ACATGCCCAGAATGTGCCGGGACAGTGT-GGGTGGGAGATCAGGGCTCTGGAATCCATGG 132089862 Query 108724 CATCCCCCAGGGTCAGAGGGCTGCTTTG 108751 | ||||||||||| || |||||||| || Sbjct 132089861 CGTCCCCCAGGGTAAGTGGGCTGCTCTG 132089834 >seq23 Length=55726280 Score = 120 bits (132), Expect = 2e-22 Identities = 570/889 (64%), Gaps = 29/889 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || || || ||| | || Sbjct 14981008 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTCGTTCATCACAAA 14980949 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | || || ||||| | || || | Sbjct 14980948 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCACAGAATTTCTATTGCATT 14980889 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | |||||| | | ||| ||||| Sbjct 14980888 CATGTGGACAGAAAATCAGAGGATTCCTTTTTGGCGGCGGTGATTGGCATCGCATCCTGT 14980829 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| |||||||| || ||| ||||| || ||||| ||| | Sbjct 14980828 TTCAGTAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTGTACGCCTCATGGAGTCGC 14980769 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| | || |||| | ||||| ||||||| Sbjct 14980768 GTTCAGGCTGACCTCAACTGCATGCAGGACCT-CTACAGAA-TGAGTGCAGACTGGAAGT 14980711 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 14980710 ACTTGATCAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 14980651 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| ||| | ||| | |||| | || ||||| | || || | | Sbjct 14980650 AGCTCAAGTCGTTAATGGGAGAAAACAACCTAGAAACTGAGAGAATGCCATCCAAT---A 14980594 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AG--GTGACAGACACACTGTACCCTACCAGCA 108159 ||||| | | |||||| | | |||| || || | | | ||| || ||| Sbjct 14980593 AAAAAGAAAGGTGGAAAAAGCATTATGCAGTCGTAAATGGAAAGCTG-ACAAACACAGGG 14980535 Query 108160 A--GATGAAGG--ACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 | || ||| ||||||| | ||| | || |||| |||| | |||||||||| Sbjct 14980534 ACTGACAAAGTGCACCCTCCTCTTGAAACG---CCTCTGTTTTCAGGCAGTGCCTATTTT 14980478 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275 |||| | | | | | ||| | | || |||| || ||| ||| | | | Sbjct 14980477 GTGGTCAGTAGGGAGTATGTGGAGTACGTTCTAGAGAATGAAAAAATCCAGAAGTTTATG 14980418 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||||||||| || ||||| || || | ||||||||||| |||||||| | | Sbjct 14980417 GAGTGGGCCAAAGACACATACAGCCCGGATGAGTATCTCTGGGCCACTCTTCAGCG-GAT 14980359 Query 108336 CCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || || | | || ||||| | |||| ||||| |||||| |||| || |||||| Sbjct 14980358 CCCTGAAGTCCCAGGCTCGCTGTCCTTAAGCCA---TAAGTATGACATGTCCGACATGCA 14980302 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| || || || | ||||||||||||||| || || || | || ||| || || Sbjct 14980301 TGCGATTGCTAGATTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGTGCCCC 14980242 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || |||||||| || |||| | | | ||| | | || || || ||| | Sbjct 14980241 CTACCCACCCTGCAGCGGGGTCCACGTTCGTTCTGTGTGCGTCTTTGGAGCAGGTGACTT 14980182 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 | ||||||| || | | || ||| | || || || ||||||||| || Sbjct 14980181 GAACTGGATGCTGCGCATGCACCACTTGTTTGCCAATAAGTTTGACACG 14980133 >seq20 Length=64166202 Score = 82.4 bits (90), Expect = 5e-11 Identities = 168/246 (68%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 107787 CCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCG 107846 |||||||| | |||||||| || ||||||| ||| | |||| || || ||||| ||| Sbjct 10462873 CCTCAGAATGTCTACTGTGTTCATGTGGATGAAAAGGCGACAGATACATTTAAAGATGCG 10462932 Query 107847 GTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGT 107905 || || | | || | |||||||||||||| ||| ||||| ||| ||| || || Sbjct 10462933 GTGCAG-CAACTACTGAGCTGCTTCCCCAATGCTTTCCTGGCCTCCAAGATGGAGCCAGT 10462991 Query 107906 GGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA 107965 || || | | ||||| | || || ||||||||||| || ||||| ||| Sbjct 10462992 TGTGTACGGCGGGATTTCCAGGCTCCAGGCGGACCTGAACTGCATCAAAGAC---CTCGC 10463048 Query 107966 GAGCTC---AGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 | ||| ||||||||||| ||| | || || || ||| || |||||| | || Sbjct 10463049 GGCCTCGGAGGTGCCATGGAAATACGCCATCAACACCTGTGGGCAGGATTTCCCCCTGAA 10463108 Query 108023 GACCAA 108028 ||||| Sbjct 10463109 AACCAA 10463114 Score = 82.4 bits (90), Expect = 5e-11 Identities = 227/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 107696 TAAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 ||||||||| ||| || || || | || || | ||||| ||||| | || | || | Sbjct 10486218 TAAAGAAGAAGCT-GAATTTCCTTTGGCGTATACAATGGTCATCCATCACAATTTCGATA 10486276 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 ||||| | |||| | |||| | || |||||||| | |||||||| || |||| Sbjct 10486277 CCTTTGCAAGGCTCTTCAGAGCTATTTACATGCCTCAGAATGTCTACTGTGTTCATGTGG 10486336 Query 107815 ATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTCCC 107872 ||| ||| | ||| || ||| ||||| ||||| || | |||| | ||||||||| Sbjct 10486337 ATGAAAAGGCGACAGTCGAATTT-AAAGATGCGGTGCAG-CAATTACTGAGCTGCTTCCC 10486394 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 ||||| ||| ||||| ||| ||| || || || || | | ||||| | || Sbjct 10486395 CAATGCTTTCCTGGCCTCCAAGATGGAGCCAGTTGTGTACGGCGGGATTTCCAGGCTCCA 10486454 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTT 107989 || ||||||||||| || ||||| ||| | ||| ||||||||||| ||| Sbjct 10486455 GGCGGACCTGAACTGCATCAAAGAC---CTCGTGGCCTCGGAGGTGCCATGGAAATACGC 10486511 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || ||| || || ||| | || ||||| Sbjct 10486512 CATCAACACCTGTGGGCAGGATTTTCCCCTGAAAACCAA 10486550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348227895502938