Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 seq15 114 2e-20 seq6 104 3e-17 seq9 102 1e-16 >seq7 Length=98542428 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 72048794 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 72048735 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 72048734 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 72048675 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 72048674 CTGTTTCTTACACCATA 72048658 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || |||| | | || | ||| || || || || || || | Sbjct 72043699 CATAGGTTTCATATGGGCCATCCTCCCTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 72043640 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||| | |||||| || || || || || || ||||| |||| Sbjct 72043639 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 72043580 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 72043579 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 72043520 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 72043519 GTTTATTTGA 72043510 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 |||||||||||| |||||||| ||||||||||| || | || || || || | | || Sbjct 72038801 CACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTG 72038742 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || |||||||| ||||| || | |||||||||| | | || || ||||||| || Sbjct 72038741 CTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCAAGG 72038682 Query 63386 TTCCAAGTATATGGC 63400 |||| ||| || || Sbjct 72038681 CTCCAGGTAAATAGC 72038667 >seq15 Length=91571448 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 83357674 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 83357733 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| |||||||| || || || || ||||| ||||||||||| ||||| ||||||| Sbjct 83357734 TGAGCCAGAATATGGATGCAAAAGAGCCAGAAAAAAAGATTCCTTCCACTGCGGCAAAGG 83357793 Query 33724 C 33724 | Sbjct 83357794 C 83357794 >seq6 Length=84719076 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| ||| | ||||||||| | ||||||| || || ||| Sbjct 81665705 GTTACTTTCTATGATGTATATATTGTTCTGCAAGCTTTCGTACTGACTACCGCGGTATTT 81665646 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 |||| | ||||| || ||||||||||| |||||||||||||| ||| ||| Sbjct 81665645 CTTGGTTTGACTGTATACACTCTACAATCTAAGAGAGATTTCAGCAAATTTG 81665594 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 81682822 TGCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCGGCCAGCGTGCAC 81682763 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 81682762 ATCCGCATGG 81682753 >seq9 Length=83561422 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 47795453 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 47795512 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 47795513 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 47795571 Score = 102 bits (112), Expect = 1e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || || ||||| |||||| Sbjct 47801722 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 47801781 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || |||| ||| || || ||||||| | || ||| || |||| Sbjct 47801782 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 47801830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629741730597360