Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq7 96.9 3e-15 >seq9 Length=83561422 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 47795451 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 47795510 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 47795511 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 47795570 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 47795571 CCACCACCCTTTCCCC 47795586 >seq7 Length=98542428 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || ||||| ||||| ||||||||| Sbjct 72048794 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 72048735 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 72048734 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 72048675 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 72048674 CTGTTTCTTACACCAT 72048659 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | || Sbjct 72031640 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 72031581 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | | |||||| || | |||||||||||| | | Sbjct 72031580 TATGTTTCAATAGCAGCATCAATATCTTCACTGTGAATCCCCACAGATACCCTCATCAAC 72031521 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||||||||||||||| Sbjct 72031520 ATATGTTGTGGTCTTTC 72031504 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || ||||| || || ||||| | || |||| | | | || | || Sbjct 72051025 TCCAGCCGTAGAAGTGCATGCTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 72050966 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| ||||| || ||||| ||||||||||| | | ||| || Sbjct 72050965 TCAAAGACTGGCTTTGATCAATAAAAGCGCCTCTCTCGGCTGCCATCTTGAGAATGGTTT 72050906 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || || ||||| | ||| || Sbjct 72050905 TCTGAGAAATTTCCCACACAGTCTTATAAAGTTGCTT 72050869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468468360331280