Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 163 4e-35 seq7 134 2e-26 seq9 107 3e-18 seq1 105 9e-18 >seq6 Length=84719076 Score = 163 bits (180), Expect = 4e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||| ||| |||||||||||||||||| Sbjct 81658949 TTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAGGAATAGATTGATGATATCCAAG 81659008 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| | || | || || ||||| || || || || ||| ||| || || ||||| Sbjct 81659009 TAGAGGTCAATGGCAGCAAATACATACTCCTCGGGTGACAGCCGATGCATCAGCGAGTGT 81659068 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 |||||||||| ||||||||| ||||| | ||||||||| | ||||| | ||||| |||| Sbjct 81659069 GTGTCATAGACAATGAATCCACAGAAAAGAAGGGCCCCTACAGCAGCGATGACCAACTCC 81659128 Query 9411 ACTGTTTCACTTTGCACAAA 9430 ||||| ||||| || | ||| Sbjct 81659129 ACTGTCTCACTGTGAAAAAA 81659148 Score = 134 bits (148), Expect = 2e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||||||||| ||||||||||| ||| |||||| | ||||| Sbjct 81665587 CCCGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTGTATACAGTCAAACCAAGA 81665646 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || || |||||||| | ||||||||||| ||| | || ||||||||||||||||| Sbjct 81665647 AATACCGCGGTAGTCAGTACGAAAGCTTGCAGAACAATATATACATCATAGAAAGTAAC 81665705 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 81682753 CCATGCGGATGTGCACGCTGGCCGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 81682812 Query 9907 TGGAGGAGCACGCGTAG 9923 |||||||||| | |||| Sbjct 81682813 TGGAGGAGCAGGGGTAG 81682829 >seq7 Length=98542428 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 72048794 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 72048735 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 72048734 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 72048675 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 72048674 CTGTTTCTTACACCATA 72048658 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 |||||||||||| |||||||| ||||||||||| || | || | || |||| | || Sbjct 72038801 CACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTG 72038742 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || |||||||| ||||| || | |||||||||| | | || || ||||||| || Sbjct 72038741 CTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCAAGG 72038682 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| || || Sbjct 72038681 CTCCAGGTAAATAGC 72038667 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || |||| | | || ||||| || || || || || || | Sbjct 72043699 CATAGGTTTCATATGGGCCATCCTCCCTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 72043640 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 72043639 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 72043580 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 72043579 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 72043520 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 72043519 GTTTATTTGA 72043510 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | ||| || || || || || || || | | Sbjct 72026863 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGA 72026804 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 72026803 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 72026744 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 72026743 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 72026698 >seq9 Length=83561422 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 47795453 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 47795512 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 47795513 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 47795571 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 47801722 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 47801781 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 36650 || || || | || ||| || || ||||||| | || ||| || |||| Sbjct 47801782 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 47801830 >seq1 Length=185838109 Score = 105 bits (116), Expect = 9e-18 Identities = 256/386 (66%), Gaps = 4/386 (1%) Strand=Plus/Plus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 |||| || ||||||| | |||||| ||||||| || |||||||| |||| | || Sbjct 114579417 GCCCTGTCAGCCTTCTCT---ACACAAAGCATTGTTTCAATAGCATTGAAGACAAAGGCC 114579473 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 | || || | |||||||| | || |||| | ||||| || ||||| |||| | | Sbjct 114579474 TCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAGACTCTATATTTCAGAATATAAG 114579533 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 || || ||| | |||||| || ||||||| | || || ||||||||||||| || | Sbjct 114579534 TTGTCCATGTCACCTTGAAAGCCACAGAAACACATTGCTTCTGTAATCTGTACTTTTGGA 114579593 Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586 | |||| | | | |||||| | ||| ||||| ||||||| || |||| Sbjct 114579594 CGAAATTGCAGCACCAGGCTTTCATATCCAGCTCCATCACTTGCTGCAACGAAAGCCAGA 114579653 Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 36646 | | || ||||| | | || || | || ||||| | | || || || Sbjct 114579654 GCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GGCTTCCAGTGCTGAATGTCCTTG 114579712 Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 36706 || ||| || || || |||||||||| || ||||| || || | | ||| | ||| Sbjct 114579713 GAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTGGTCCATCTGCCAA 114579772 Query 36707 ATGTCATGATATTGAATTGGAAAAAT 36732 ||| || |||||| | |||||||| Sbjct 114579773 ATGCCACGATATTCGAGAGGAAAAAT 114579798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658093514859080