Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 149 1e-30 seq11 143 6e-29 seq8 125 2e-23 seq9 123 6e-23 seq10 107 4e-18 seq23 98.7 2e-15 seq15 89.7 1e-12 >seq3 Length=119479920 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||| || ||| | || |||||||| | || || |||| Sbjct 109160477 ACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATCTTTC 109160536 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| || |||||||| || || || || ||||||||||| |||||||| ||||||| Sbjct 109160537 ATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCGTATCCTGG 109160596 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTA-GGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || |||| |||||||| ||||| ||| ||||| ||||| || || || ||||| Sbjct 109160597 ATCTTGGCCTTTATATTTTCTATTGTATC-CTAGGGTTCAACCTCGAGAGTGATGGTCTT 109160655 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| ||||| || || |||||||| ||| Sbjct 109160656 CCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 109160689 >seq11 Length=61308211 Score = 143 bits (158), Expect = 6e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || |||||||| || || || || Sbjct 57863687 ATACCGCCTCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCG 57863746 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || || || Sbjct 57863747 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGG 57863806 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| ||||| || || || || || | ||| ||||| || || Sbjct 57863807 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCC 57863866 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || || || ||||| |||||||||||| Sbjct 57863867 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 57863920 >seq8 Length=94057673 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || |||||||| || || | || || || || || || || Sbjct 24467436 GTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24467495 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| || || || || || || || || ||||| ||||| || || Sbjct 24467496 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 24467555 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| || || ||||| || || || ||||| || || || || Sbjct 24467556 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 24467615 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 24467616 TTCACGAAAATCTGCAT 24467632 >seq9 Length=83561422 Score = 123 bits (136), Expect = 6e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 47795586 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 47795527 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| |||||||| ||| | ||||| || || ||| | Sbjct 47795526 GCTATATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 47795467 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 47795466 ATCAGCAGAGATGAAG 47795451 >seq10 Length=83980604 Score = 107 bits (118), Expect = 4e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | ||||||||| | || || |||| || | || || ||| | | Sbjct 34154405 TGGTGGTACTTTGTGTCTAAAGGAGTGGAGTATTTAGACACGGTGTTTTTTATCTTGAGG 34154346 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| |||||| | ||| || |||||||||||||| | ||| |||||||| ||| Sbjct 34154345 AAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 34154286 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| ||||||| ||||||| Sbjct 34154285 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAAG 34154249 >seq23 Length=55726280 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || || |||||||| || || | ||||||||||| |||||| | Sbjct 23152776 CCATCTTCCAGTTGCTTGCCGGCAAAAATGAGTCTTAGCTGATCAGGAGGAATTCCTGCC 23152835 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| || ||||||||||||| ||||| | || |||| || || Sbjct 23152836 TTGTCCTGGATCTTGGCCTTTACATTTTCTAATGTATCTGAGGATTTAACCTTGAGAGTG 23152895 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| | ||| ||||||| | |||||||| ||| Sbjct 23152896 ATGTTCTTCTCCCTAATGGTTTTTATGTAAATCTGCATCTTG 23152937 >seq15 Length=91571448 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 83356427 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 83356368 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 83356367 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 83356308 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 83356307 TTTACCCTGGATGCTGACTTCTAA 83356284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151256232161996