Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq11 82.4 9e-11 >seq11 Length=61308211 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||| || |||||| | ||||| || | ||| |||| || || ||||| ||||| || Sbjct 17981585 TTAGGTTGCAAACATGTTAAAGGCATCCTGTTATATGGGCCCCCAGGTTGTGGTAAGACT 17981644 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAAT 164616 | |||||||| |||| |||| | || ||| | || || ||| | || ||| Sbjct 17981645 CTGTTGGCTCGACAGATTGG-CAAGATGTTGAATGCAAGAGAGCCC--AAAGTGGTCAAT 17981701 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || || ||||| ||||| || | || | ||| Sbjct 17981702 GGGCCAGAAATCCTTAACAAATATGTGGGAGAATCAGAGGCTAACATTCGTAAACTCTTT 17981761 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 17981762 GCTGATGCTGAAGAGGAGCAAAGGA 17981786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595800219769200