Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq5 132 5e-26 >seq5 Length=99680356 Score = 132 bits (146), Expect = 5e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||||||||||| || | Sbjct 2989802 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2989743 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || | ||| || ||| |||||||||||||| ||||| || | Sbjct 2989742 TGCCCCAGGCTGAGAACCACGGCCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 2989683 Query 10260 ATCTAAAGACCCT 10272 | || |||||||| Sbjct 2989682 AGCTGAAGACCCT 2989670 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 2987479 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 2987420 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| || ||||| | ||| || Sbjct 2987419 TAGAAGCCTATATGACAACGAAGAT 2987395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547313261333120