Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq5 156 6e-33 seq25 105 9e-18 >seq5 Length=99680356 Score = 156 bits (172), Expect = 6e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| |||| ||| |||||||||||| || |||| || ||||| |||||| Sbjct 23252289 GTCTGGAACAAGCGTTCATCATCCCATTCTGGATGCTCCTGTTTGAGGACATCACACACT 23252348 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| || ||||||||||| ||||| Sbjct 23252349 CTGTTGTGTTCCCGCAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGACCAAAG 23252408 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | || || | | || || |||||||| | | Sbjct 23252409 ACCTCCTGCCCCACAGCAAACCGCAGGTGCTCAGGAATATGAGGCGGGTAGATCATTTCC 23252468 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| |||||||| | ||| ||||||| || || | ||| |||| Sbjct 23252469 ACCTGAGTGTCTTTGACTGTGGGCGGATACACCTCGCCATTAATGATCT 23252517 Score = 150 bits (166), Expect = 3e-31 Identities = 215/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| || | || ||||| || || ||||| | |||| |||||||| || | Sbjct 23250723 GAACACTGAAGGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 23250782 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| || || ||||||||||||||||| Sbjct 23250783 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGTTTCCAGTAGT 23250842 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 | || || ||||| || ||| || ||||| | ||| || || ||||| || || | Sbjct 23250843 CAGGAGAACAGATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCCCCAAGTTCTA 23250902 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||| |||| ||||||||||| | || || ||||||||||||| | | | |||| Sbjct 23250903 CCATGGTCTCCCCGAAGATGGCATCTGGGCGAGGCTTTTCCACCAGAAGGGCAGGATACA 23250962 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 ||||| || || ||||| || || || || | || ||||| |||||||| |||| Sbjct 23250963 GCTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 23251022 Query 8973 CTG 8975 ||| Sbjct 23251023 CTG 23251025 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||||||||| || ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 23253406 TCTTACCCCGTGACCCAGGCCTTTGGTGAAAGCTGGACCTCGCTTAGGATCTGTCTTGAA 23253465 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| ||||||| |||||||| | || ||||||||||| || Sbjct 23253466 AAACTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGGGGTC 23253525 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | || ||| ||||||||||| | | | ||| || || | Sbjct 23253526 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 23253585 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| || ||||| Sbjct 23253586 TTTCTTCCCTGAAAAATGAGAA 23253607 >seq25 Length=39536964 Score = 105 bits (116), Expect = 9e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || || || || || ||||||||||| |||| | Sbjct 26007787 TCTTGACAATGTTGAAGCCCATTTCACCACCAAATGTACTCGGTTTCCAGTACTCCGGAG 26007728 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| || | | |||||| |||||||| || ||||| || | || | || | Sbjct 26007727 AACAGATGGGATTGCCTAGGAGGCCCTTGAGGGAGAAGGGAGCTCCAATTTCTATCATAC 26007668 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| ||| ||| || ||| || | | | || | ||| ||||||| Sbjct 26007667 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCGAGAAGCAGCCCAGGGTAGAACTCCA 26007608 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || ||||||||||| || || || | || || || || ||||| |||||| Sbjct 26007607 AGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 26007552 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 25997444 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 25997387 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 25997386 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 25997327 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| |||||| Sbjct 25997326 CAGGTATGAACTTCCTCC 25997309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708439449331280