Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq8 116 3e-21 seq11 107 2e-18 seq9 93.3 4e-14 >seq8 Length=94057673 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| ||||| |||| |||| ||||| ||||||||| || || | ||| || Sbjct 24467399 TTAGACACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTA 24467458 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| |||||||||||| || ||| | ||||| | || ||||| || Sbjct 24467459 GTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTC 24467518 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || || || || || ||||| | || || ||||||||| ||| ||||| | | Sbjct 24467519 GGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGG 24467578 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || || || || || ||||| || |||||||| Sbjct 24467579 CTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467632 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 24468318 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24468377 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 24468378 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24468437 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 24468438 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468497 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 24468498 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 24468544 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 24468090 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24468149 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 24468150 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24468209 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 24468210 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468269 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 24468270 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24468316 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 24467634 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24467693 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 24467694 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24467753 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||||||| ||| ||||| | | || || Sbjct 24467754 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24467813 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 24467814 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 24467862 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24467921 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 24467922 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24467981 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 24467982 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468041 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || || || || || ||||| || |||||||| Sbjct 24468042 TCCAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 24468088 >seq11 Length=61308211 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||||| ||||| || || || || || | ||| |||||| Sbjct 57863690 CCGCCTCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAA 57863749 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || || Sbjct 57863750 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 57863809 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| ||| ||| ||||| | | || || Sbjct 57863810 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 57863869 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||||||||| Sbjct 57863870 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 57863916 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 57863462 CCACCTCTGAGACGCAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 57863521 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || || ||||||| | || ||||| || || || Sbjct 57863522 AGGGTGCGCCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 57863581 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| ||| ||| ||||| | | || || Sbjct 57863582 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 57863641 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 57863642 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863688 >seq9 Length=83561422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || || || | || | || || || | |||| | ||| || Sbjct 63528351 CACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCATCTTC 63528292 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| ||| |||| || | | |||||| || || || || || |||||||| | Sbjct 63528291 CAGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGGATGCCCTCTTTGTCTTG 63528232 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || || || | | |||||| | || || |||| |||||||| || Sbjct 63528231 GATTTTAGCTTTAACATTCTCAATGGTGTCACTGGACTCAACCTCAAGGGTGATGGTCTT 63528172 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || |||||||||||||||||| Sbjct 63528171 GCCCGTCAGGGTCTTCACAAAGATCTGCATG 63528141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448237197721320