Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20 172 9e-39 seq5 159 5e-35 >seq20 Length=64166202 Score = 172 bits (190), Expect = 9e-39 Identities = 205/278 (74%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 24091236 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 24091177 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||||| ||||||| | |||| || |||| Sbjct 24091176 CCGGCGTCTGGCCCGGCGTGGGGGTGTCAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 24091117 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 24091116 TCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 24091057 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | ||||| || | ||||| || || Sbjct 24091056 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTCTACGCGCTCAAACGCCAGGG 24090997 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 || | |||| || || || |||||| || | ||| Sbjct 24090996 GCGCACTCTTTACGGCTTCGGCGGTTAATTTTTTCATC 24090959 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| || || |||||||| || ||||||||||| || | Sbjct 24110486 CGCTAAGCGCCACCGCA-AGGTCTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 24110544 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || ||||| || |||||||| |||| || | |||| || |||| Sbjct 24110545 TCCGGCGTCTGGCCCGGCGTGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 24110604 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | | ||| |||| || || || ||| |||| Sbjct 24110605 CCCGCGGGGTGCTCAAGGTCTTCCTGGAAAACGTGATCCGGGACGCGGTCACCTACACCG 24110664 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| | || || || | || || || | Sbjct 24110665 AGCACGCCAAGCGCAAGACAGTCACCGCCATGGATGTTGTTTACGCGCTCAAGCGCCAGG 24110724 Query 16671 GCCG 16674 | || Sbjct 24110725 GGCG 24110728 Score = 143 bits (158), Expect = 4e-30 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| ||||||| | | || || || |||||||| || ||||||||||| || || Sbjct 24129294 GCTAAGCGCCATCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 24129352 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||||| |||| || | |||| || |||| Sbjct 24129353 CCGGCGTCTGGCCCGGCGTGGGGGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 24129412 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||| || ||| ||| |||| || || || ||| ||||| Sbjct 24129413 CCGCGGGGTGCTCAAGGTCTTTCTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGA 24129472 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 24129473 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 24129532 Query 16672 CCG 16674 || Sbjct 24129533 GCG 24129535 Score = 138 bits (152), Expect = 2e-28 Identities = 181/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 23933000 CTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGCCTGGCCCGCCGCGGG 23933059 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| ||||||| | |||| ||||||| |||| ||| | ||| | ||| Sbjct 23933060 GGCGTCAAGCGCATCTCTGGCCTCATCTACGAAGAGACGCGTGGTGTGCTAAAGGTGTTC 23933119 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| ||| || || || ||||||||||| || || ||||||||| Sbjct 23933120 CTGGAGAATGTGATCCGTGACGCCGTCACTTACACCGAGCACGCCAAGCGCAAGACTGTC 23933179 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | ||||| | || || || | || || || || || | | || || ||||| Sbjct 23933180 ACCGCTATGGACGTGGTTTACGCGCTCAAGCGCCAGGGGCGCACTCTCTACGGCTTTGGC 23933239 Query 16694 AGTTAATCTTC 16704 | ||| |||| Sbjct 23933240 GGCTAAGCTTC 23933250 Score = 138 bits (152), Expect = 2e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || ||||| Sbjct 26079754 CTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGCCTGGCCCGGCGTGGC 26079813 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||| ||||| Sbjct 26079814 GGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGGGGGGTGCTCAAGGTCTTC 26079873 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 26079874 CTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 26079933 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || || || Sbjct 26079934 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGGCG 26079974 Score = 134 bits (148), Expect = 2e-27 Identities = 193/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 24142945 CGCCAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 24142886 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || || || || || ||||| | ||||| | |||| || |||| Sbjct 24142885 CCGGCGTCTGGCCCGCCGCGGCGGCGTTAAGCGAATTTCTGGTCTCATCTACGAGGAGAC 24142826 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| || | || || || ||| ||||| Sbjct 24142825 CCGCGGGGTGCTCAAGGTTTTCCTGGAGAACGTGATTCGAGACGCGGTCACCTACACCGA 24142766 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 24142765 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 24142706 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | ||||| || ||| | ||| ||| Sbjct 24142705 GCGCACTCTCTATGGCTTCGGAGGCTAAGCTT 24142674 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| || |||||||| || || || Sbjct 24009043 CGCTAAGCGTCACCGAAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAACCCGCCAT 24009102 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | |||||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 24009103 TAGACGTCTGGCCCGGCGCGGAGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 24009162 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 24009163 CCGCGGGGTGCTCAAGGTCTTCCTAGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 24009222 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || ||| ||||||| | ||||| || | || || || || Sbjct 24009223 GCACGCCAAGCGCAAGACGGTTACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 24009282 Query 16672 CCG 16674 || Sbjct 24009283 GCG 24009285 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || || |||||||| || ||||| Sbjct 25233558 CTGCGGGACAACATCCAGGGCATCACCAAGCCTGCCATTCGGCGTCTGGCCCGGCGTGGG 25233617 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| || | || | ||| ||||| Sbjct 25233618 GGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTCTTC 25233677 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 25233678 TTGGAGAATGTGATCCGGGACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 25233737 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || || || | ||||||| || || Sbjct 25233738 ACCGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGGGCGCACTCTTTATGGCTTCGG 25233796 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | || || Sbjct 26121818 CTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGCCTGGCCAGACGCGGC 26121759 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||| ||||| Sbjct 26121758 GGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTCTTC 26121699 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 26121698 CTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 26121639 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| | ||||| || | || || || || || | | || || ||||| Sbjct 26121638 ACCGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGGGCGCACCCTCTACGGCTTTGG 26121580 Score = 120 bits (132), Expect = 5e-23 Identities = 189/268 (71%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | | |||| || ||||||||||| || ||||||||||| || || Sbjct 24171491 GCTAAGCGCCACCGGA-AGGTCTTGCGGGATAACATCCAGGGCATCACCAAGCCGGCCAT 24171433 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| || ||||| || || ||||| | ||||| | |||| || |||| Sbjct 24171432 CAGGCGTCTGGCCCGCCGTGGCGGCGTTAAGCGCATTTCTGGCCTTATCTACGAGGAGAC 24171373 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | ||||| | | ||| |||| || || || ||| ||||| Sbjct 24171372 CCGCGGGGTGCTCAAAGTGTTCCTGGAAAACGTGATCCGGGACGCGGTCACCTACACCGA 24171313 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || ||||||| | || || || | ||||| || || Sbjct 24171312 GCACGCCAAGCGCAAGACCGTTACTGCCATGGACGTGGTTTACGCGCTCAAACGCCAGGG 24171253 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || || || ||||| Sbjct 24171252 TCGCACTCTTTACGGCTTCGGTGGTTAA 24171225 >seq5 Length=99680356 Score = 159 bits (176), Expect = 5e-35 Identities = 200/272 (74%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| |||| ||||||||||| ||||||||||| || | Sbjct 47089844 CGCTAAGCGGCACCGCAAAG-TCTTGAGAGACAACATCCAAGGCATCACCAAGCCCGCCA 47089902 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| ||||| ||||||||||| |||| || | | || || |||| Sbjct 47089903 TCCGGCGTCTTGCTCGGCGTGGGGGAGTCAAGCGGATCTCGGGCCTCATTTACGAGGAGA 47089962 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| |||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 47089963 CCCGGGGTGTGTTGAAGGTGTTCCTGGAGAACGTCATCCGCGACGCGGTCACCTACACGG 47090022 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 47090023 AGCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 47090082 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | | || || || ||| | ||| || Sbjct 47090083 GCCGCACCCTGTACGGCTTCGGAGGCTAAGCT 47090114 Score = 159 bits (176), Expect = 5e-35 Identities = 200/272 (74%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| |||| ||||||||||| ||||||||||| || | Sbjct 47427085 CGCTAAGCGGCACCGCAAAG-TCTTGAGAGACAACATCCAAGGCATCACCAAGCCCGCCA 47427143 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| ||||| ||||||||||| |||| || | | || || |||| Sbjct 47427144 TCCGGCGTCTTGCTCGGCGTGGGGGAGTCAAGCGGATCTCGGGCCTCATTTACGAGGAGA 47427203 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| |||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 47427204 CCCGGGGTGTGTTGAAGGTGTTCCTGGAGAACGTCATCCGCGACGCGGTCACCTACACGG 47427263 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 47427264 AGCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 47427323 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | | || || || ||| | ||| || Sbjct 47427324 GCCGCACCCTGTACGGCTTCGGAGGCTAAGCT 47427355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066388823441