Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 9e-15 seq8 86.0 2e-11 >seq7 Length=98542428 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 72040258 GCTCAGCAGCTGTGGTATGCCATCATTGAGTCCCAGACAGAGACAGGTACCCCGTACATG 72040317 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| ||||||||| |||| || || || | Sbjct 72040318 CTCTACAAAGATTCCTGTAATCGGAAGAGTAACCAGCAGAACCTGGGAACGATCAAATGC 72040377 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| ||||| || || || | ||||| ||| Sbjct 72040378 AGCAATCTATGCACAGAAATAGTAGAATATACC 72040410 Score = 84.2 bits (92), Expect = 6e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| | || | |||| || || ||||||| |||| || || || ||||||||| Sbjct 72050839 CAGAGCATACAAGAAATTCCTGATGACCTGAAGCAACTTTATAAGACTGTGTGGGAAATT 72050898 Query 365011 TCCATGCGAAC---TCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGC 365067 || | ||| ||||| | ||||| ||||| | || |||||||| ||| ||| Sbjct 72050899 TCTCAGAAAACCATTCTCA---AGATGGCAGCCGAGAGAGGCGCTTTTATTGATCAAAGC 72050955 Query 365068 CAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTC 365127 ||||| || ||| | ||| || |||| | || | ||| || || |||||| ||| Sbjct 72050956 CAGTCTTTGAACATCCACATTGCTGAGCCTAACTATGGCAAACTCACTAGCATGCACTTC 72051015 Query 365128 TACGGGTGGAA 365138 ||||| ||||| Sbjct 72051016 TACGGCTGGAA 72051026 >seq8 Length=94057673 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 111390 ACAAATGCAAATGAACTTGCA-GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 |||||||| |||||||| | |||| | || ||||| ||||||| ||||| || || Sbjct 41185383 ACAAATGCTAATGAACTGTCTTGCAAGGGA-GTGAAAATCTGGGATGCCAATGGGTCCCG 41185441 Query 111449 TGACTTTCTAGATTCAGT-TGGTCTTGTC-GACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||||| | || ||| ||| || || | || |||||||| ||| | || |||||| Sbjct 41185442 AGACTTCTTGGA--CAGCCTGGGATTCTCCGCCAGAGAAGAAGGGGATTTAGGCCCAGTT 41185499 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 ||||| ||||| ||| | || ||||| ||||| |||||| Sbjct 41185500 TACGGCTTTCAGTGGAGGCATTTTGGGGCAGAATACAAA 41185538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303192669636134