Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 2e-12 seq8 86.0 5e-12 >seq11 Length=61308211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||| || || | || || || | || ||| | || || ||| | Sbjct 57863920 CAAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCC 57863861 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||||||| | || || ||||| || || || ||||| || ||||| Sbjct 57863860 CAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGA 57863801 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | |||||||| || ||||||| | | | | |||||| Sbjct 57863800 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTA 57863741 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| || || Sbjct 57863740 CAACATCCAGAAAGAGTCGAC 57863720 >seq8 Length=94057673 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | || || ||| ||| | Sbjct 24467632 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24467573 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| || Sbjct 24467572 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 24467513 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| || || |||| | | | | || || ||| Sbjct 24467512 CAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 24467453 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||||||||| Sbjct 24467452 ATCCAGAAAGAATCTAC 24467436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429885503613735