Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8365 127 1e-24 seq1 109 4e-19 seq3 96.9 2e-15 seq2 86.0 4e-12 >seq8365 Length=226949 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 49143 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 49202 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 49203 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 49237 >seq1 Length=185838109 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| ||||||||||||||||||| |||| || ||||| || |||||| | Sbjct 89071606 AAGCCCGTTGCCTTGGCTGTGGTTTCGCTGGATAACAGTTAGGGACAGTGGGAATCTCCT 89071665 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 89071666 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 89071700 >seq3 Length=119479920 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| ||||||||| | ||||| ||||||||| || || | || Sbjct 109160473 CAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATC 109160532 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 | | ||| || || ||||| || || | ||| ||||| | || | ||||| | || Sbjct 109160533 TTTCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCGTATC 109160592 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| | ||| | | ||||| |||||| || | || || || Sbjct 109160593 CTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTGATGGT 109160652 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 109160653 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 109160688 >seq2 Length=120857687 Score = 86.0 bits (94), Expect = 4e-12 Identities = 70/85 (82%), Gaps = 5/85 (6%) Strand=Plus/Plus Query 25912 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTC 25966 ||||||||||||||| ||| |||||||| ||||| || |||| ||| |||| ||| Sbjct 41401857 CCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCGTGTTCATCCATTC 41401916 Query 25967 ATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| ||||||||||| Sbjct 41401917 ATGCGCATCACTACTTAGATGACGA 41401941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334907860137347