Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7 134 2e-26 seq9 107 2e-18 seq1 105 8e-18 >seq7 Length=98542428 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 72048794 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 72048735 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 72048734 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 72048675 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 72048674 CTGTTTCTTACACCATA 72048658 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 72038801 CACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTG 72038742 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || |||||||| ||||| || | |||||||||| | | || || ||||||| || Sbjct 72038741 CTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCAAGG 72038682 Query 63190 TTCCAAGTATATGGC 63204 |||| ||| || || Sbjct 72038681 CTCCAGGTAAATAGC 72038667 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | ||| || || || || || || || || | Sbjct 72026863 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGA 72026804 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 72026803 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 72026744 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 72026743 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 72026698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || |||| | | || ||||| || || || || || || | Sbjct 72043699 CATAGGTTTCATATGGGCCATCCTCCCTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 72043640 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 72043639 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 72043580 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 72043579 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 72043520 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 72043519 GTTTATTTGA 72043510 >seq9 Length=83561422 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 47795453 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 47795512 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 47795513 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 47795571 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 47801722 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 47801781 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33153 || || || |||| ||| || || ||||||| | || ||| || |||| Sbjct 47801782 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 47801830 >seq1 Length=185838109 Score = 105 bits (116), Expect = 8e-18 Identities = 383/588 (65%), Gaps = 16/588 (3%) Strand=Plus/Plus Query 32648 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 32707 |||||| || | || || || || ||||||| ||| || |||| | | |||||| || Sbjct 114579227 TTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCCAGTAATTCATT 114579284 Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 |||||| |||| |||||| || | || || || | ||| || || | Sbjct 114579285 GGAAAATGTGATCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGCGTGAAAG- 114579343 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 ||| | ||| ||||| | |||||| ||||| | | | || ||||| ||| | Sbjct 114579344 --CAGCAGAGAT--TTCCTCC-ACTGCCCCAAAGCCTACCACTCATTCTCCGTAA--GTT 114579396 Query 32828 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 ||| || | | ||| | | |||| || ||||||| | |||||| ||||||| || Sbjct 114579397 GCT-TCTT-TGTCCCCAGTCAGGCCCTGTCAGCCTTCTCT---ACACAAAGCATTGTTTC 114579451 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947 |||||||| |||| | || | || || | |||||||| | || |||| | || Sbjct 114579452 AATAGCATTGAAGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAG 114579511 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 ||| || ||||| |||| | ||| || ||| | |||||| || |||| || | || Sbjct 114579512 ACTCTATATTTCAGAATATAAGTTGTCCATGTCACCTTGAAAGCCACAGAAACACATTGC 114579571 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 || ||||||||||||| || || |||| | | | |||||| | ||| || Sbjct 114579572 TTCTGTAATCTGTACTTTTGGACGAAATTGCAGCACCAGGCTTTCATATCCAGCTCCATC 114579631 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33127 ||| ||||||| || |||| | | || ||||| | | || | || | || Sbjct 114579632 ACTTGCTGCAACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GG 114579690 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 ||||| | | || || || || ||| || || || |||||||||| || ||||| Sbjct 114579691 CTTCCAGTGCTGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTC 114579750 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || || | | ||| | ||| ||| || |||||| | |||||||| Sbjct 114579751 AGCTTTCTGGTCCATCTGCCAAATGCCACGATATTCGAGAGGAAAAAT 114579798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633555671105200