Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8 201 2e-46 seq11 179 7e-40 seq14 84.2 4e-11 >seq8 Length=94057673 Score = 201 bits (222), Expect = 2e-46 Identities = 178/220 (81%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 24468327 AGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 24468386 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||||||||||||||| ||||| || || |||||||| || ||||| ||| Sbjct 24468387 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCC 24468446 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||||||| |||||||||||| ||| | || || |||| ||| Sbjct 24468447 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 24468505 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || ||||| |||||||| ||||| ||||||||| Sbjct 24468506 GATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATT 24468545 Score = 199 bits (220), Expect = 7e-46 Identities = 177/219 (81%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 24468099 AGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 24468158 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||||||||||||||| ||||| || || |||||||| || ||||| ||| Sbjct 24468159 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCC 24468218 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||||||| |||||||||||| ||| | || || |||| ||| Sbjct 24468219 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 24468277 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||||| |||||||| ||||| |||||||| Sbjct 24468278 GATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24468316 Score = 197 bits (218), Expect = 3e-45 Identities = 182/228 (80%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||| ||| || || || ||||| |||||||| || || || Sbjct 24467406 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 24467465 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | ||||||||||||||| ||||| || || |||||||| || Sbjct 24467466 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24467525 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||||| |||||||||||| ||| | || || Sbjct 24467526 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCAC 24467584 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || ||||| |||||||| ||||| |||||||| Sbjct 24467585 CTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467632 Score = 194 bits (214), Expect = 3e-44 Identities = 176/219 (80%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 24467643 AGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 24467702 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||||||||||||||| ||||| || || |||||||| || ||||| ||| Sbjct 24467703 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCC 24467762 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||||||| |||||||||||| ||| | || || |||| ||| Sbjct 24467763 TTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 24467821 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||||| |||||||| ||||| |||||||| Sbjct 24467822 GATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467860 Score = 190 bits (210), Expect = 4e-43 Identities = 175/219 (80%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 24467871 AGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 24467930 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||||||||||||||| ||||| || || |||||||| || ||||| ||| Sbjct 24467931 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCC 24467990 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||||||| |||||||||||| ||| | || || |||| ||| Sbjct 24467991 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 24468049 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || || |||||||| ||||| |||||||| Sbjct 24468050 GATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 24468088 >seq11 Length=61308211 Score = 179 bits (198), Expect = 7e-40 Identities = 175/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || || |||||||| |||||||| |||||||| || || | Sbjct 57863699 AGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAAAGAGTGCGG 57863758 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || |||||||| || ||||| ||| Sbjct 57863759 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCC 57863818 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| ||| |||||||||||| ||| | || || |||| ||| Sbjct 57863819 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 57863877 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||| || || || |||||||| || || ||||||||| || Sbjct 57863878 GATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 57863920 Score = 172 bits (190), Expect = 1e-37 Identities = 171/219 (78%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 57863471 AGACGCAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 57863530 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || || ||||| || || |||||||| || ||||| ||| Sbjct 57863531 CCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCC 57863590 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| ||| |||||||||||| ||| | || || |||| ||| Sbjct 57863591 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 57863649 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| ||||| |||||||| Sbjct 57863650 GATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863688 Score = 168 bits (186), Expect = 1e-36 Identities = 165/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 57863252 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 57863311 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || |||||||| || ||||| ||||| || || Sbjct 57863312 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 57863371 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| || |||||||||||| ||| | || || |||| ||||||||| || Sbjct 57863372 ATCTTGGCCTTCACATTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTCTT 57863430 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 57863431 GCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863460 >seq14 Length=93904894 Score = 84.2 bits (92), Expect = 4e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCAT-CTTC 68311 |||||| || ||||||||||| |||||||| | || ||||| || |||| |||| Sbjct 49433593 ACCAAGCACAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGAGTTTGACCATGCTTC 49433652 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || || || || || || || || ||||| |||| ||||||||||||||||| Sbjct 49433653 CT-CTCTTTGCCTGCAAACATCAGATGCTGCTGGTCAGGTGAGATGCCTTCCTTGTCTTG 49433711 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || | ||||| || ||||||||| | | || | | ||| ||||| || Sbjct 49433712 GATTTTGGTTTTGACATTCTTGATGGTGTCACTGGGCTTGACCTTGAGGGTAATGGTCTT 49433771 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||| Sbjct 49433772 GCCTGCAAGGGTCTTCACAAAGCTCTGCAT 49433801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921511379061640