Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 >seq5 Length=99680356 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| || |||||||| || ||||||||||| || | Sbjct 2989802 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2989743 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| |||||||| ||||| | ||| || ||| || || || || || |||| |||| Sbjct 2989742 TGCCCCAGGCTGAGAACCACGGCCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 2989683 Query 9981 ATCTAAAGACCCTACG 9996 | || |||||||| || Sbjct 2989682 AGCTGAAGACCCTCCG 2989667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||||||||||||||| |||||||| || || ||||||| Sbjct 2987479 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 2987420 Query 10140 TAGAAGCATACATGACAA 10157 ||||||| || ||||||| Sbjct 2987419 TAGAAGCCTATATGACAA 2987402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552650218352480