Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq8 141 1e-28 seq11 129 6e-25 seq20 91.5 2e-13 seq5 91.5 2e-13 seq28 89.7 6e-13 seq32 84.2 2e-11 >seq8 Length=94057673 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| | Sbjct 24468318 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24468377 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || ||||| ||||| | ||||||||||| || Sbjct 24468378 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24468437 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || |||| || | | |||||||| | ||||| Sbjct 24468438 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468497 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | |||||||| || ||||| || ||||| || ||||| |||||| || Sbjct 24468498 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATTGTC 24468548 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| | Sbjct 24468090 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24468149 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || ||||| ||||| | ||||||||||| || Sbjct 24468150 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24468209 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || |||| || | | |||||||| | ||||| Sbjct 24468210 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468269 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || ||||| || ||||| || || || ||||| Sbjct 24468270 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24468316 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| | Sbjct 24467634 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24467693 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || ||||| ||||| | ||||||||||| || Sbjct 24467694 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24467753 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| ||| || |||| || | | |||||||| | ||||| Sbjct 24467754 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24467813 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || ||||| || ||||| || || || ||||| Sbjct 24467814 TCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467860 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| | Sbjct 24467862 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24467921 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || ||||| ||||| | ||||||||||| || Sbjct 24467922 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 24467981 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || |||| || | | |||||||| | ||||| Sbjct 24467982 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 24468041 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || || ||||| || || || ||||| Sbjct 24468042 TCCAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 24468088 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || || |||| |||| |||| || || || || || ||||| |||| Sbjct 24467405 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 24467464 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || ||| | || || |||||||| || ||||| ||||| | ||||||||||| || Sbjct 24467465 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 24467524 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || |||| || | | |||||||| | ||||| Sbjct 24467525 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 24467584 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || ||||| || ||||| || || || ||||| Sbjct 24467585 CTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467632 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 24477591 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 24477650 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 24477651 TACTAACGAGGA 24477662 >seq11 Length=61308211 Score = 129 bits (142), Expect = 6e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| ||||| |||| || ||| || || || |||||||| | Sbjct 57863689 ACCGCCTCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGA 57863748 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 57863749 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 57863808 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 57863809 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 57863868 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| ||||| || || ||||| |||||||| |||||||| || Sbjct 57863869 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGAC 57863922 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||||| |||| |||| ||| |||||| || || ||||| |||| | Sbjct 57863462 CCACCTCTGAGACGCAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 57863521 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 57863522 AGGGTGCGCCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 57863581 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 57863582 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 57863641 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || || || ||||| Sbjct 57863642 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863688 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | ||||| |||| || ||| || || || |||||||||| Sbjct 57863234 CCACCCCTGAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 57863293 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 57863294 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 57863353 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 57863354 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCACC 57863413 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || || || ||||| Sbjct 57863414 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863460 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 51098039 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 51098098 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 51098099 TACTAACGAGGACTGA 51098114 >seq20 Length=64166202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 25886578 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 25886637 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 25886638 ATACTAACGAGGA 25886650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 25736585 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 25736526 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 25736525 TACTAACGAGGA 25736514 >seq5 Length=99680356 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 36214737 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 36214678 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 36214677 ATACTAACGAGGA 36214665 >seq28 Length=46177339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 20959523 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20959464 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 20959463 TACTAACGAGGA 20959452 >seq32 Length=124114077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 83816986 AATCGAACCCAGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACAAGGA 83817044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543147363228080