Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 seq8 114 1e-20 seq3 93.3 4e-14 >seq11 Length=61308211 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| ||||| || ||||||||||| | | ||||| | ||| Sbjct 57863249 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 57863308 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| |||||||||||| || || || || || || Sbjct 57863309 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 57863368 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | || ||||| || | || | |||| Sbjct 57863369 TGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 57863428 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || |||||||| ||||| Sbjct 57863429 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 57863460 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | ||||| || || | ||||| ||||| || ||||||||||| | Sbjct 57863689 ACCGCCTCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGA 57863748 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| ||||||||||| ||| | ||||||| |||||||||||| || Sbjct 57863749 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 57863808 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 57863809 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 57863868 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||||||||| || || || || || |||||||| Sbjct 57863869 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 57863919 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | || || ||||||||||| Sbjct 57863492 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCT 57863551 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| || || || || || || || || || ||| Sbjct 57863552 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 57863611 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||||||||||| || Sbjct 57863612 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 57863671 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 57863672 TTCACGAAAATCTGCAT 57863688 >seq8 Length=94057673 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | || || || || | || |||||||| || |||||||| || | Sbjct 24467405 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 24467464 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||||| | || || |||||||| ||||| | ||||||| |||||||||||| || Sbjct 24467465 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 24467524 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 24467525 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 24467584 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || |||| || || |||||||| ||||| Sbjct 24467585 CTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 24467632 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | || || |||||||| ||| Sbjct 24467664 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24467723 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| |||||||||||| || || || || || || || || || ||| Sbjct 24467724 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 24467783 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||| || |||| || Sbjct 24467784 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 24467843 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 24467844 TTCACGAAAATCTGCAT 24467860 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | || || |||||||| ||| Sbjct 24467892 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24467951 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| |||||||||||| || || || || || || || || || ||| Sbjct 24467952 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 24468011 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | ||||| ||||||| || Sbjct 24468012 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATCGTCTTCCCGGTCAGGGTC 24468071 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 24468072 TTCACGAAAATCTGCAT 24468088 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | || || |||||||| ||| Sbjct 24468120 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24468179 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| |||||||||||| || || || || || || || || || ||| Sbjct 24468180 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 24468239 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||| || |||| || Sbjct 24468240 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 24468299 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 24468300 TTCACGAAAATCTGCAT 24468316 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | || || |||||||| ||| Sbjct 24468348 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 24468407 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| |||||||||||| || || || || || || || || || ||| Sbjct 24468408 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 24468467 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||| || |||| || Sbjct 24468468 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 24468527 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 24468528 TTCACGAAGATCTGCATT 24468545 >seq3 Length=119479920 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || ||||| |||||| ||||||| || | | | | | Sbjct 109160470 TCTCAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCC 109160529 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||| | |||||||| ||| | || || | ||||| || |||||||||||||| | Sbjct 109160530 ATCTTTCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCGT 109160589 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||| | || | |||||| || || || || | ||| | Sbjct 109160590 ATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTGAT 109160649 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | ||||| |||||||| ||||| || Sbjct 109160650 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 109160688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499584611538280