Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-38 seq25 109 8e-19 >seq5 Length=99680356 Score = 174 bits (192), Expect = 2e-38 Identities = 219/301 (73%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||| |||||||| || || ||||| |||||||| | Sbjct 23250724 AACACTGAAGGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGA 23250783 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||||||||||||||| | Sbjct 23250784 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGTTTCCAGTAGTC 23250843 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || ||||| || ||| || ||||||||||| || || ||||| || || | Sbjct 23250844 AGGAGAACAGATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCCCCAAGTTCTAC 23250903 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| |||| |||||||||||| | || || || ||||| || | | | ||| || || Sbjct 23250904 CATGGTCTCCCCGAAGATGGCATCTGGGCGAGGCTTTTCCACCAGAAGGGCAGGATACAG 23250963 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | ||| |||||||| ||||| ||||| ||||| || |||||||| || Sbjct 23250964 CTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTCC 23251023 Query 9175 T 9175 | Sbjct 23251024 T 23251024 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||| | || ||| ||||||| || || || |||||||| ||||| || || Sbjct 23252289 GTCTGGAACAAGCGTTCATCATCCCATTCTGGATGCTCCTGTTTGAGGACATCACACACT 23252348 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | || ||||| | |||||| Sbjct 23252349 CTGTTGTGTTCCCGCAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGACCAAAG 23252408 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||| | || || | | |||| || | ||| | | Sbjct 23252409 ACCTCCTGCCCCACAGCAAACCGCAGGTGCTCAGGAATATGAGGCGGGTAGATCATTTCC 23252468 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| ||||||| || || | ||| Sbjct 23252469 ACCTGAGTGTCTTTGACTGTGGGCGGATACACCTCGCCATTAAT 23252512 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 10117 TCGCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCC 10176 ||| ||||||||| || |||| ||| | |||||||| || |||||| ||| ||| Sbjct 23253402 TCGGTCTTACCCCGTGACCCAGGCCTTTGGTGAAAGCTGGACCTCGCTTAGGATCTGTCT 23253461 Query 10177 TAAAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGG 10236 | ||||| || || || ||||| || | ||||| || ||||||| || |||||||||| Sbjct 23253462 TGAAAAACTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGG 23253521 Query 10237 GATCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCA 10296 | || ||||| || | || | | | || ||| |||||||||| | ||||||| || | Sbjct 23253522 GGTCAGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTTGAATCAGGAA 23253581 Query 10297 G 10297 | Sbjct 23253582 G 23253582 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || ||||||| | |||| || || || ||||| || || ||| ||| | Sbjct 23255038 CTTACGTGTTGAACAGTTTTCACCATAGAATCCTGTGCGCGTGCAGTCACACTGATACTG 23255097 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || ||||||| ||||||||||| || Sbjct 23255098 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACACGGGTTGGAACAGCAAGGATT 23255157 Query 10960 GGCTGCAATTTAAAAGATAGAATA 10983 ||| ||| |||||| || ||| Sbjct 23255158 TGCTACAA--TAAAAGTAAGGATA 23255179 >seq25 Length=39536964 Score = 109 bits (120), Expect = 8e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || | || || || || || || |||||||||||| Sbjct 26007794 GTAGCCGTCTTGACAATGTTGAAGCCCATTTCACCACCAAATGTACTCGGTTTCCAGTAC 26007735 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| || | | ||| || || | ||| || ||||| || | || Sbjct 26007734 TCCGGAGAACAGATGGGATTGCCTAGGAGGCCCTTGAGGGAGAAGGGAGCTCCAATTTCT 26007675 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || ||||||| ||| | || |||| || | || |||| ||| Sbjct 26007674 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCGA-GAAGCAGCCCAGGGTA 26007616 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 26007615 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 26007556 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 26007555 TCCTACAAG 26007547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723640817915800