Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8 154 1e-32 seq11 152 5e-32 seq9 127 2e-24 >seq8 Length=94057673 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || ||||| || ||||||||| | || || ||| ||| Sbjct 24468545 AATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 24468486 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | || |||| ||||| ||||| || ||| |||||| Sbjct 24468485 CGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 24468427 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| ||||||| | ||| || || |||||||| || | ||||||||| ||||||| Sbjct 24468426 AGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACA 24468367 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || ||||| |||| |||||| | ||||| || Sbjct 24468366 ACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGAGGTGG 24468318 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || ||||||||| | || || ||| ||| | Sbjct 24467632 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24467573 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 24467572 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 24467514 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| || || |||||||| || | ||||||||| |||||||| Sbjct 24467513 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24467454 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || ||||| |||| ||||| ||||| || || Sbjct 24467453 CATCCAGAAAGAATCTACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 24467406 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || ||||||||| | || || ||| ||| | Sbjct 24468316 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24468257 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 24468256 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 24468198 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| || || |||||||| || | ||||||||| |||||||| Sbjct 24468197 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24468138 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| |||||| | ||||| || Sbjct 24468137 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGAGGTGG 24468090 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || ||||||||| | || || ||| ||| | Sbjct 24467860 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 24467801 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || ||| ||||||| Sbjct 24467800 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 24467742 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| || || |||||||| || | ||||||||| |||||||| Sbjct 24467741 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24467682 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| |||||| | ||||| || Sbjct 24467681 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGAGGTGG 24467634 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || |||||| | || || ||| ||| | Sbjct 24468088 ATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACGATCACCCTGGAGGTGGAGCCCAGC 24468029 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 24468028 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 24467970 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| || || |||||||| || | ||||||||| |||||||| Sbjct 24467969 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 24467910 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| |||||| | ||||| || Sbjct 24467909 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGAGGTGG 24467862 >seq11 Length=61308211 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 57863919 AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 57863860 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| || || ||||| || ||| |||| Sbjct 57863859 AGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGA 57863801 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | ||||| || ||| || Sbjct 57863800 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTA 57863741 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || || |||| ||||| ||||||||||| |||||||||| Sbjct 57863740 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGTCTGAGAGGCGG 57863690 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 57863688 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863629 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || ||| ||||||| Sbjct 57863628 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 57863570 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 57863569 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 57863510 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| |||||| | ||||| || Sbjct 57863509 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTGCGTCTCAGAGGTGG 57863462 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 57863460 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 57863401 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || ||||| || ||| ||||||| Sbjct 57863400 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 57863341 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || || |||||| Sbjct 57863340 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 57863281 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| ||||| ||||||| ||| | || || ||| Sbjct 57863280 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTCCGTCTCAGGGGTGGC 57863233 >seq9 Length=83561422 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| ||| Sbjct 63528142 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 63528201 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||||| ||||||| ||||||||||| || || | ||||| Sbjct 63528202 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG 63528261 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || |||| || |||||||||||||| || | ||||| ||| |||||||| Sbjct 63528262 CAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAT 63528321 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| | || | || ||||| |||||||| || Sbjct 63528322 ATCCAGAGAGACTCCACCCTGCACTTGGTGCTCCG 63528356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500112547934080