Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq14 244 4e-59 seq20 168 3e-36 seq25 100 1e-15 seq3 100 1e-15 seq7 93.3 2e-13 >seq14 Length=93904894 Score = 244 bits (270), Expect = 4e-59 Identities = 1032/1601 (64%), Gaps = 49/1601 (3%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||||| ||| ||||||| Sbjct 1979950 GCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAA 1980009 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || ||||| ||||| ||||| |||||| ||||| || || | || |||||| Sbjct 1980010 GTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCCAAGCTATGTCGCTTTTACT 1980069 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTA--AATCAA-TGGTAAATTCAAATGCCAAA 451090 || | ||| || | | || | ||||| | || ||| | | || | || | | Sbjct 1980070 GACACGGAACGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAA---CGAACCCGACC 1980126 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 ||||| || | |||||| |||||| | ||||| |||| | |||||||| | ||| || Sbjct 1980127 AACACGGTTTTTGATGCCAAACGTCTGATTGGACGTAGATTTGATGATGCTGTTGTCCAG 1980186 Query 451151 AAAGAGA--AAAAATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATAT 451206 || | || ||| | ||| ||| || || ||| | ||| | |||| | | Sbjct 1980187 TCTGATATGAAGCATTGGCCCTTC--ATG--GTGGTGAATGATGCAGGCAGGCCCAAGGT 1980242 Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 |||||| | || || || || || |||| ||| ||| || || | || |||||||| Sbjct 1980243 CCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCTTCTATGGT 1980302 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 | | || || ||||| |||| ||||| || |||| | ||||| |||| || Sbjct 1980303 TTTGACAAAGATGAAGGAAATCACAGAAGCCTACCTTGGGAAGACTGTTACCAATGCTGT 1980362 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | || || || ||||| || ||||| | || || || || || |||||||| ||| Sbjct 1980363 TGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAAC 1980422 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 |||||||||| | ||||| ||| |||| || ||||| || || || |||||| | || || Sbjct 1980423 TATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTA 1980482 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 || ||| || ||| | || || | ||| | | ||||| || || || Sbjct 1980483 CGGTTTAGACAA---AAAGGTTGGAGCTGAGAGAAACGTACTGACCTTTGACTTAGGAGG 1980539 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| ||| || | || || ||||||||||| | ||||| || || | || Sbjct 1980540 TGGCACTTTCGATGTGTCAATCCTCTCTATTGAAGATGGAATCTTTGAGGTCAAATCTAC 1980599 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTTGAA 451626 ||| || || || || | || ||||| |||| || ||| || | || | Sbjct 1980600 AGCTGGAGACACCCACTTAAGTGGAGAAGACTTTGACAACTGAATGGTCAACCATTTTAT 1980659 Query 451627 AACTGATGTTCAA-CGAAAACTAAAAGTA-GATATTTCTACTAACCAAAAAGCACTTAGA 451684 | || ||||| || || | | ||| | || || | ||| | | || | || Sbjct 1980660 CGCAGA-ATTCAAGCGCAAGC-ATAAGAAGGACATCAGTGAGAACAAGAGGGCCGTCCGA 1980717 Query 451685 CGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTC-AACACAAACTACTAG 451743 || || || || ||| ||||| ||| ||| ||| | ||| | | || Sbjct 1980718 CGCCTGCGCACTTCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCA-GGCCAG 1980776 Query 451744 TATAAACATTGAT--AGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTGCT 451801 ||| | |||||| | | || ||| ||||| || | ||| || |||||||||| Sbjct 1980777 TATTGAGATTGATTCACTCTA--TGAAGGAATCGACTTCTATACCTCTATTACCCGTGCC 1980834 Query 451802 AAATTTGAATCAATT---TGTT--CCAGTATTTTTGCACGGGTAATGAAACCTGTTGATC 451856 ||||||| |||| || | || || | |||| || | ||||| || Sbjct 1980835 CGATTTGAA-GAATTGAATGCTGACCTGTTCCGTGGCAC----CCTGGACCCTGTAGAGA 1980889 Query 451857 AAGTATTACATGATTCTAAAATTAGTAAAGA-TAAAATTGATGAAATTGTGCTTGTAGGA 451915 ||| | | ||| | || | | |||| | ||| |||| ||||| || || || Sbjct 1980890 AAGCCCTTCGGGATGC-CAAGCTGGACAAGACCCAGATTCATGATATTGTCCTAGTGGGT 1980948 Query 451916 GGTTCTACACGAATTCCTAAAATTCA-AGATATGT---TGTCTTCTTATTTTGGAGGAAA 451971 |||||||| | || || || ||||| | | | | | |||||| | ||||| Sbjct 1980949 GGTTCTACCTGCATCCCCAAGATTCAGAAACTTCTACAGGACTTCTTCAAT----GGAAA 1981004 Query 451972 ACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGC 452031 | |||| ||||||| | || |||||||| |||||||| |||||||| || || || || Sbjct 1981005 AGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGC 1981064 Query 452032 AGCTATTCTAACAGG-TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAA 452090 ||| || ||| | || || || |||||| | |||| | ||| | | ||||| | Sbjct 1981065 AGCCATCCTATCTGGAGACAAAT-CTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCA 1981123 Query 452091 CACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAG 452150 | ||||| || ||||| | ||||| ||||||||| | |||||| | || || | Sbjct 1981124 CTCCTCTTTCCCTTGGCATGGAAACTGCTGGTGGAGTCATGACTGTGCTCATAAAGTGCA 1981183 Query 452151 GAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAG 452210 ||| | |||||| || ||| ||||| || | ||| ||| ||||| || | Sbjct 1981184 ACACTACGATTCCTACCAAGCAGACACAAACCTTCACTACCTACTCTGACAACCAGCCTG 1981243 Query 452211 GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAG 452270 |||| ||||| || | |||||| || | ||| ||||| ||||| ||| || | Sbjct 1981244 GTGTGCTCATTCAGGTTTATGAAGGTGAGCATGCCATGACCAAGGATAACAATCTGCTTG 1981303 Query 452271 GAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTA 452330 | | ||| || || ||| ||||| || | || |||||| |||||| | | Sbjct 1981304 GCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGTGGTGTTCCTCAGATTGAAGTCA 1981363 Query 452331 CCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAA 452390 | | |||| ||||||| ||||| ||||| ||||| ||| || || || | || | Sbjct 1981364 CTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCTGCTGTGGACAAGAGTACAGGGA 1981423 Query 452391 AATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAA 452450 || | | || || || || ||||| || || ||||| || ||||| || || Sbjct 1981424 AAGAAAACAAGATCACCATCACTAACGACAAGGGTCGTTTGAGCAAGGAAGACATAGAGT 1981483 Query 452451 AAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491 ||||| | ||||| || || | ||||| | | |||||| Sbjct 1981484 GCATGGTCCAGGAAGCTGAGAAGTACAAGGCTAAAGATGAA 1981524 Score = 87.8 bits (96), Expect = 7e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| |||||| | ||||||||||| Sbjct 37962152 GCCACTAAGGATGCTGGTCAGATATCTGGACTAAATGTACTTCGAGTAATTAATGAACCC 37962211 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| ||||| || || ||||| |||| |||||| |||| Sbjct 37962212 ACAGCTGCTGCACTGGCTTATGGTCTAGACAAATCAGAAGA 37962252 >seq20 Length=64166202 Score = 168 bits (186), Expect = 3e-36 Identities = 459/697 (66%), Gaps = 13/697 (2%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| ||||| || || ||||||| || || || || || | ||| | || || Sbjct 31552775 GCCATTGGCATTGACCTGGGTACCACCTACTCGTGCGTGGGGGTGTTCCAGCACGGCAAG 31552716 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 || || || || || || ||||| || || || ||||| || | || || || Sbjct 31552715 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACTCC--CA--GCTACGTGGCCTT 31552660 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 ||||| | || | || | ||| | || || || | | | |||| ||| || Sbjct 31552659 CACGGACACCGAGCGGCTCATTGGGGATGCAGCCAAGAACCA-GGTAGCCATGAATCCCC 31552601 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | |||||| |||||| | || ||| | | | | ||||| | || | Sbjct 31552600 AGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCCTGTAGTGC 31552541 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || ||| | ||| | | ||| | | ||| | ||| | |||| |||||| | | Sbjct 31552540 AATCAGACATGAAACTTTGGCCTTTTCAAGTAATCAATGACGAAGGCAAGCCCAAGGTAA 31552481 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 || || ||||| || | ||| |||| ||||| |||||||| |||||||| | Sbjct 31552480 TGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATTTCTTCTATGGTGC 31552421 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | ||||| ||||| || || || || | | | || || || || |||| || | Sbjct 31552420 TGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTCACCAATGCTGTGA 31552361 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || |||||||||||||| | ||||| || || || || |||||||| | Sbjct 31552360 TCACTGTGCCAGCTTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGA 31552301 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||| | ||||| || ||||||| || ||||| ||||| ||||| | || |||| Sbjct 31552300 TTGCGGGTCTCAATGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCCTATG 31552241 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | ||| ||| | || | ||| | | || || | | |||||| | ||||||| Sbjct 31552240 GCTTAGATAAAGC---AGGTCAGGGAGAGAGACATGTTCTGATCTTTGATCTGGGTGGAG 31552184 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 | || |||| || || || | || || |||||| | ||||| |||||||| || Sbjct 31552183 GCACATTTGATGTGTCCGTCCTGACCATAGATGATGGGATTTTTGAGGTAAAGGCCACAG 31552124 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || || || || || || |||| || Sbjct 31552123 CTGGGGACACCCACCTGGGTGGAGAGGACTTTGACAA 31552087 >seq25 Length=39536964 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 29077543 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 29077484 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | | || || ||||| || Sbjct 29077483 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 29077431 Score = 84.2 bits (92), Expect = 9e-11 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 451195 AAAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGA 451251 ||| || || |||||||| || | ||||| |||| || || |||||||||||||| Sbjct 29077993 AAAACCATACATTCAAGTTGATATTGGAGGTGGGCAAACAAAGACATTTGCTCCTGAAGA 29077934 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 |||||| | |||||||| ||||||||||| ||||| || || Sbjct 29077933 AATTTCTGCCATGGTTCTCACTAAAATGAAGGAAACTGCTGA 29077892 >seq3 Length=119479920 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || || ||||| || |||||| | | Sbjct 109160685 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAG 109160626 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| ||| || || || || |||| ||||||||||||||||||||| Sbjct 109160625 GATACAATAGAAAATATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGATCAG 109160566 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||| | |||||||| ||||| | || || || Sbjct 109160565 CAAAGACTGATCTTTGCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTACAAC 109160506 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 | | | ||||| | || ||||| | || || ||||| Sbjct 109160505 AATCAAAAGGAATCCACTCTTCATCTTGTGTTGAGACT 109160468 >seq7 Length=98542428 Score = 93.3 bits (102), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||||| ||| ||||||| Sbjct 30255806 GCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAA 30255747 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014 || ||||| ||||| ||||| |||||| ||||| || || Sbjct 30255746 GTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCC 30255706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975474450022796