Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 116 4e-21 seq15 114 1e-20 seq7 107 2e-18 >seq9 Length=83561422 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||| Sbjct 47795453 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 47795512 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 47795513 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 47795572 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 47795573 ACCACCCTTTCCCC 47795586 Score = 98.7 bits (108), Expect = 1e-15 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| | Sbjct 47801711 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 47801767 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 |||| ||||||| || |||||||| || | | ||||||| | | ||| || | Sbjct 47801768 CATGAGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGG 47801827 Query 19454 ATAAATCTAC 19463 |||| || || Sbjct 47801828 ATAAGTCAAC 47801837 >seq15 Length=91571448 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | || ||||||||||||| ||| | Sbjct 83357674 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 83357733 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || |||||||| || || ||||| ||||| ||||| | Sbjct 83357734 TGAGCCAGAATATGGATGCAAAAGAGCCAGAAAAAAAGATTCCTTCCACTGCGGCAAAGG 83357793 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 83357794 CTACAACCCGTTCTCC 83357809 Score = 100 bits (110), Expect = 3e-16 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| |||||| | ||||||||||||| || || | ||| |||||||| Sbjct 83356284 TTAGAAGTCAGCATCCAGGGTAAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATC 83356341 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 83356342 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 83356401 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 83356402 TCCATAAAGTCAAATGGATTTTCTAC 83356427 >seq7 Length=98542428 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||| ||||| || || Sbjct 72048791 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 72048732 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 72048731 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 72048672 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 72048671 TTTCTTACACCATA 72048658 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| ||||| || | | || Sbjct 72031640 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 72031581 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||||||||| ||| ||| ||||| || || || || || | |||||| | ||| || Sbjct 72031580 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 72031522 Query 48719 CATATATTGAGGTCTTTCA 48737 ||||| ||| ||||||||| Sbjct 72031521 CATATGTTGTGGTCTTTCA 72031503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||| ||||| | ||| ||| |||| || | ||| || || | Sbjct 72051025 TCCAGCCGTAGAAGTGCATGCTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 72050966 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || ||||||||||| || ||||| || |||||||| | | ||| Sbjct 72050965 TCAAAGACTGGCTTTGATCAATAAAAGCGCCTCTCTCGGCTGCCATCTTGAGAATGGTTT 72050906 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 72050905 TCTGAGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 72050857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562041086968680