Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq14 232 5e-55 seq7 122 7e-22 seq12 104 2e-16 seq3 98.7 8e-15 seq25 96.9 3e-14 seq9 87.8 1e-11 >seq14 Length=93904894 Score = 232 bits (256), Expect = 5e-55 Identities = 377/534 (71%), Gaps = 8/534 (1%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||||| || |||| ||||| ||| Sbjct 1979956 GGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAAGTGGAA 1980015 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || |||||||||||||| ||| |||| || ||| ||||| |||| || || || Sbjct 1980016 ATAATAGCCAATGATCAAGGAAACCGAACCACCCCAAGCTATGTCGCTTTTACTGACACG 1980075 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || | |||||||| ||||| | |||| | || || ||||| || || Sbjct 1980076 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAACGAACCCGACCAACACGGTT 1980135 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 |||||||| |||||| | |||||| | || ||| ||||| | ||| ||| | |||||| Sbjct 1980136 TTTGATGCCAAACGTCTGATTGGACGTAGATTTGATGATGCTGTTGTCCAGTCTGATATG 1980195 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCAT 550297 ||||||||||| ||| | || |||| | | || | || | | ||| || Sbjct 1980196 AAGCATTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAG-TAGAATA 1980254 Query 550298 GAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAATGAAAAT 550356 |||| | ||| | ||| | ||||| | | || ||||||||||| | || || Sbjct 1980255 CAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCTTCTATGGTTTTGACAAAGAT 1980314 Query 550357 GAAACAAA-CAGCCAG-TGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAACTGT 550413 ||| ||| || ||| || | |||| |||| ||||| |||| || | || || Sbjct 1980315 GAAGGAAATCA--CAGAAGCCTACCTTGG-GAAGACTGTTACCAATGCTGTTGTCACAGT 1980371 Query 550414 ACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGG 550473 ||| || || ||||||||||| || ||||| ||||| |||||||||||| ||||||||| Sbjct 1980372 ACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGG 1980431 Query 550474 ACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||| ||| | || |||||||| || ||||||||||| |||| || || Sbjct 1980432 TCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTACGG 1980485 Score = 201 bits (222), Expect = 9e-46 Identities = 456/681 (67%), Gaps = 6/681 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 ||| |||| ||| | || || || |||| || ||| | || || ||| |||||| | Sbjct 1980727 ACTTCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCAGTATTGAGATT 1980786 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 |||||| | | ||| ||||| || | |||| ||||| | | ||| ||||||||| Sbjct 1980787 GATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 1980846 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | | |||| || || | || | || || ||||| ||| | | ||| | Sbjct 1980847 TTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCC 1980906 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | || || || | | ||||| ||||| || || ||||| ||||| | || || Sbjct 1980907 AAGCTGGACAAGACCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTACCTGCATCCCC 1980966 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 || |||| || | || || ||| || |||||| ||| || | ||| | || | || Sbjct 1980967 AAGATTCAGAAACTTCTACAGGACTTCTT-CAATGGAAAAGAACTGAATAAGAGCATCAA 1981025 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 || |||||||||||||| |||||||| || | || ||||| || || |||||| | | Sbjct 1981026 CCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTATCTGGAGACAA 1981085 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 |||||| | ||| || | | || | ||||| |||||||| || ||||| | || Sbjct 1981086 ATCTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCTCTTTCCCTTGGCATGGA 1981145 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 ||| | ||| || | |||||| || || | | || ||||| |||||| || | Sbjct 1981146 AACTGCTGGTGGAGTCATGACTGTGCTCATAAAGTGCAACACTACGATTCCTACCAAGCA 1981205 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 | | || |||| || || || || || ||| ||| ||||| ||| ||| Sbjct 1981206 GACACAAACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTCATTCAGGTTTATGA 1981265 Query 552452 AG--GAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 || ||| | | | | || || ||||| |||| ||||| | ||| | | ||| Sbjct 1981266 AGGTGAGCATGCCA--TGACCAAGGATAACAATCTGCTTGGCAAGTTTGAACTCACAGGC 1981323 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 || ||||| || |||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 1981324 ATACCTCCAGCCCCTCGTGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAAT 1981383 Query 552570 GGAATTTTGAATGTGACTGCT 552590 || ||| | ||||| ||||| Sbjct 1981384 GGCATTCTCAATGTCTCTGCT 1981404 >seq7 Length=98542428 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| || || ||||||||||| || ||||| ||||| Sbjct 30254830 GTTACCAATGCTGTTGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACC 30254771 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||| | || |||||||| || |||||| Sbjct 30254770 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT 30254711 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| || || Sbjct 30254710 GCTGCTATTGCTTACGG 30254694 Score = 105 bits (116), Expect = 5e-17 Identities = 221/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 |||||||| ||| | || || || |||| || ||| | || || ||| |||||| | Sbjct 30254363 ACTGCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCAGTATTGAGATT 30254304 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 |||||| | | ||| ||||| || | |||| ||||| | | ||| ||||||||| Sbjct 30254303 GATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 30254244 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | | |||| || || | || | || || ||||| ||| | | ||| | Sbjct 30254243 TTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCC 30254184 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | || || ||| | | ||||| ||||| || || ||||| ||||| | || || Sbjct 30254183 AAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTACCCGCATCCCC 30254124 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 || |||| || | || || ||| || |||||| ||| || | ||| | || | || Sbjct 30254123 AAGATTCAGAAACTTCTACAGGACTTCTT-CAATGGAAAAGAACTGAATAAGAGCATCAA 30254065 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGC 552238 || |||||||||||||| |||||||| Sbjct 30254064 CCCTGATGAGGCTGTTGCTTATGGTGC 30254038 Score = 93.3 bits (102), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||||| || |||| ||||| ||| Sbjct 30255800 GGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAAGTGGAA 30255741 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || |||||||||||||| ||| |||| || || ||||| |||| || || || Sbjct 30255740 ATAATAGCCAATGATCAAGGAAACCGAACCACCCCGAGCTATGTCGCTTTTACTGACACG 30255681 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 |||| || | |||||||| ||||| | |||| || || || || ||||| || Sbjct 30255680 GAACGATTGATCGGTGATGCCGCAAAGAACCAAGTTGCAATG--AACCCGACCAACACGG 30255623 Query 550176 TTTTTGATG 550184 |||||| || Sbjct 30255622 TTTTTGGTG 30255614 Score = 87.8 bits (96), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || || ||||| |||| ||||| | ||| | | ||| || ||||| || |||||| Sbjct 30253357 ACCAAGGATAACAATCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGT 30253298 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || || |||||||| ||||| ||||| ||||||||||| ||| | ||||| || Sbjct 30253297 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 30253238 Query 552588 GCT 552590 ||| Sbjct 30253237 GCT 30253235 >seq12 Length=33091231 Score = 104 bits (114), Expect = 2e-16 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 550424 TTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTT 550483 ||||||||||| || ||||| ||||| |||||||||||| ||||||||| || ||||| Sbjct 8443547 TTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTA 8443606 Query 550484 CTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| | || |||||||| || ||||||||||| Sbjct 8443607 CTTAGAATCATCAATGAGCCAACTGCTGCTGC 8443638 >seq3 Length=119479920 Score = 98.7 bits (108), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||| || ||| || | | ||||| |||| | || | ||||| Sbjct 109160477 ACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATCTTTC 109160536 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 | ||| || || ||||| || ||||||||||||||||||||||||||||| |||| || Sbjct 109160537 ATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCGTATCCTGG 109160596 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTA 563445 || || |||| || |||||||| | | | |||||||| | || || Sbjct 109160597 ATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTGATGGTCTTC 109160656 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||| |||||||| ||||| Sbjct 109160657 CCCGTAAGGGTTTTCACGAAAATCTGCAT 109160685 >seq25 Length=39536964 Score = 96.9 bits (106), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 |||||||| | || ||||| ||||||| | ||||||||||| ||||| ||||| Sbjct 29077558 CTTTTGTTCTTTTAG--GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATG 29077501 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 | ||||| || || || |||||||||||| |||||||||| | |||||| | | || | Sbjct 29077500 CCCAACGCCAGGCAACCAAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATCA 29077441 Query 550494 TCAATGAACC 550503 ||||||| || Sbjct 29077440 TCAATGAGCC 29077431 >seq9 Length=83561422 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 563260 CGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG 563317 ||||| || | || ||||| | | ||| ||| |||||||| || | ||||| | Sbjct 63528356 CGGAGCACCAAGTGCAGGGTGGAGTCTCTCTGG--ATATTGTAGTCTGAGAGAGTGCGGC 63528299 Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377 |||||| || ||||| ||||||||||| || | |||||| ||||| || || || |||| Sbjct 63528298 CATCTTCCAGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGGATGCCCTCTT 63528239 Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTA 563436 | ||||| ||||| ||| || |||||| || ||| || || | | || || || Sbjct 63528238 TGTCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTG-GACTCAACCTCAAGGGTG 63528180 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || || || || || || || ||||| Sbjct 63528179 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 63528142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028786351977130