Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq5 140 4e-28 seq10 96.9 4e-15 >seq5 Length=99680356 Score = 140 bits (154), Expect = 4e-28 Identities = 230/327 (70%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || || |||||||| ||||| |||| ||| ||||| | || |||||||| ||||| Sbjct 37102660 GTTTCACAGACCAGCTCAGCCCCGTTGATGGTGGATGGGTTTCTGGGGGAGTCGGTAACT 37102719 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | |||| || || ||||||||| | ||||||||||||| ||||||| Sbjct 37102720 CTTCCCCTGAAGCTTCCTGCAGGAGAGAAGATCTATTCCATCACCTGGCTTCACAACGGA 37102779 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||| ||| || | ||| || | || || |||| | || | Sbjct 37102780 ACATCTATCGTCTTCATAGACCCAAATGACG-CACGA--------ATCCTGGTGACTGCT 37102830 Query 2058 CCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACC 2115 | |||| || ||| ||| ||| |||| |||||||||||| | || || ||||||| Sbjct 37102831 CGCAAAC--GGAAAGATGCACTGAACGTCACCCAGTCCTACTCCTTGCAGCTCAGCAACC 37102888 Query 2116 TAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACG 2175 | ||||| |||||| || | |||| |||| ||| | | |||| | | | | | Sbjct 37102889 TGACGATGGCAGACACAGGATTTTACAAAGCCCAGATAGGCACAGAGAACTC-TTCAGTG 37102947 Query 2176 -TTTCCAGCTACACGCTGAGGATCTTC 2201 ||||| | ||||| |||||||||||| Sbjct 37102948 TTTTCCTGTTACACTCTGAGGATCTTC 37102974 Score = 136 bits (150), Expect = 5e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || |||||| |||||||||| |||| ||| || ||||| Sbjct 37108051 ACTGAGGAACTTACAAGTTGCCAATCATTCTCAACTGTCTGTGAATGGGACTTGTGAGAT 37108110 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| ||||||||| | | ||| |||| ||||||||||||| |||| ||| || || Sbjct 37108111 CCACCTGACCTGTACAGCGGAGAATCCAAATGACAACATCTTACTCAAGTGGCAGATCTC 37108170 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| || ||||| |||| | |||||||||||||| || || Sbjct 37108171 AGGAAACACATCTCTAAATGAAGCCAACATCACTATCTCCTGGGACCCCAAGACTTCCAA 37108230 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||||| || | || || | |||||| | || ||| | ||||| Sbjct 37108231 TGAAGAGACCTACACCTGCATAGCTCAGAATCCTATCAGCAATTTATCCTTCTCCGTCTC 37108290 Query 2447 GGCCCAGA 2454 ||||||| Sbjct 37108291 TGCCCAGA 37108298 Score = 125 bits (138), Expect = 9e-24 Identities = 227/327 (69%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || || |||||||| ||||| |||| ||||||||| | || |||||||| ||||| Sbjct 34792348 GTTTCACAGACCAGCTCAGCCCCGTTGATAGTGAATGGGTTTCTGGGGGAGTCGGTAACT 34792289 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | |||| || || | ||| ||| | ||||||||||||| |||| || Sbjct 34792288 CTTCCCCTGAAGCTTCCTGCAGGAGGGAACATCTATTCCATCACCTGGCTTCACAATGGA 34792229 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || ||| ||| || | ||| || | || || |||| | | | Sbjct 34792228 ACATCTATCATCTTCATAGACCCAAATGACG-CACGA--------ATCCTAGTGATTGCT 34792178 Query 2058 CCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACC 2115 || |||| || ||| ||| ||| || | |||||||||||| | || || || |||| Sbjct 34792177 CCCAAAC--GGAAAGATGCACTGAACGTCGCCCAGTCCTACTCCTTGCAGCTCAGTAACC 34792120 Query 2116 TAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACG 2175 | |||| ||||| || || ||||| ||| |||| || | |||| || | | | Sbjct 34792119 TGACTATGGCAGACATAGGATCTTACAGAGCCATGATAGCCACAGAGA-CATCTTCAGTG 34792061 Query 2176 -TTTCCAGCTACACGCTGAGGATCTTC 2201 ||||||| ||||| |||||||||||| Sbjct 34792060 TTTTCCAGTTACACTCTGAGGATCTTC 34792034 >seq10 Length=83980604 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATATCATCATCA 177737 ||||||||||| ||||| ||| |||||||||||||||| || | | || || | ||| Sbjct 14049927 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTTAATAACCAGAGTCTA-CAGC-TCA 14049870 Query 177738 CAGAAA--ATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAG 177793 |||| | || |||||| || |||| | | ||||||| |||||||| || ||| | Sbjct 14049869 CAGAGAGGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCCATCAGGAGGG 14049810 Query 177794 AGGATTTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATG 177838 ||||| ||| |||| ||||||||||||||||| ||| || Sbjct 14049809 AGGATGCGGGGGATTATCAGTGTGAGGTCTCCAACCTGGTCAGTG 14049765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629207394972520