Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 179 7e-40 seq2 93.3 8e-14 >seq7 Length=98542428 Score = 179 bits (198), Expect = 7e-40 Identities = 188/245 (77%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 45578154 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 45578211 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | | || || | ||||| || ||||| || | |||||| ||||| Sbjct 45578212 GCTCCCGGAGGAGGCCGGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCA 45578271 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 45578272 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 45578331 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| | Sbjct 45578332 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 45578391 Query 241623 GAGAC 241627 | ||| Sbjct 45578392 GGGAC 45578396 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/113 (79%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGC 213598 || || ||||| || ||||||||| ||| || ||||||||||| ||||| ||| || | Sbjct 72040397 ATTTCTGTGCATAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTT--ACTCTTCC 72040340 Query 213599 GTTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 | | ||| |||| |||||||||||||| |||| || |||||| ||||||| Sbjct 72040339 GATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGGGAC 72040287 >seq2 Length=120857687 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 1327524 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 1327465 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 1327464 GCGATGCGGTTCCTCATGCGCTTTCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 1327405 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 1327404 ATGGGGGAC 1327396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931420585230080