Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq14 168 4e-36 seq7 102 5e-16 seq25 86.0 4e-11 >seq14 Length=93904894 Score = 168 bits (186), Expect = 4e-36 Identities = 460/695 (66%), Gaps = 12/695 (2%) Strand=Plus/Plus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 |||| || | ||| ||||||||||||||||||| |||| |||||| || || | | Sbjct 1980716 GACGCCTGCGCACTTCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCA 1980775 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | |||| ||||||| || | ||||||||| || | |||| |||||| | || Sbjct 1980776 GTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCC 1980835 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 ||||||||| | | |||| || || | || | || || || || ||| | Sbjct 1980836 GATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCC 1980895 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | | ||| | || || ||||| | || | ||||| ||||| || || || ||||| | Sbjct 1980896 TTCGGGATGCCAAGCTGGACAAGACCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTA 1980955 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAAT 475783 | | || || || || ||||| | || | | || ||||| ||| | | ||| Sbjct 1980956 CCTGCATCCCCAAGAT-TCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTGAAT 1981014 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 | || | || |||||||| |||||||| ||||| || |||||||| ||||| || || Sbjct 1981015 AAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTA 1981074 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATTGTACT--TGTT-GACGTAACTCCACTT 475900 || || | || | |||| | || ||| | || |||| || || ||||| ||| Sbjct 1981075 TCTGG--AGACAAATCTGAAAATGTTCAAGATT-TGCTGCTGTTGGATGTCACTCCTCTT 1981131 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCT 475960 || | || | ||||| | ||| || | |||||| || || | | || ||| | Sbjct 1981132 TCCCTTGGCATGGAAACTGCTGGTGGAGTCATGACTGTGCTCATAAAGTGCAACACTACG 1981191 Query 475961 ATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 || || ||| | || || || | || || ||||| || || | ||| | Sbjct 1981192 ATTCCTACCAAGCAGACACAAACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTC 1981251 Query 476021 ATCCAAATCTTTGAAGGTGA--AAGAAAATTCACTAAAGATAATAACAAACTTGGAACTT 476078 || || | | ||||||||| | | | | || || ||||| || ||||| | | Sbjct 1981252 ATTCAGGTTTATGAAGGTGAGCATGCCA--TGACCAAGGATAACAATCTGCTTGGCAAGT 1981309 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 || | || ||| || ||||| || || | || |||||||| |||||||| ||||||| Sbjct 1981310 TTGAACTCACAGGCATACCTCCAGCCCCTCGTGGTGTTCCTCAGATTGAAGTCACTTTTG 1981369 Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||||||||| ||||| ||||| ||||| ||||| Sbjct 1981370 ATATTGATGCCAATGGCATTCTCAATGTCTCTGCT 1981404 >seq7 Length=98542428 Score = 102 bits (112), Expect = 5e-16 Identities = 227/338 (67%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 |||| || | ||||||||||||||||||||||| |||| |||||| || || | | Sbjct 30254374 GACGCCTGCGCACTGCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCA 30254315 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | |||| ||||||| || | ||||||||| || | |||| |||||| | || Sbjct 30254314 GTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCC 30254255 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 ||||||||| | | |||| || || | || | || || || || ||| | Sbjct 30254254 GATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCC 30254195 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | | ||| | || || ||||| || || | ||||| ||||| || || || ||||| | Sbjct 30254194 TTCGGGATGCCAAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTA 30254135 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAAT 475783 | | || || || || ||||| | || | | || ||||| ||| | | ||| Sbjct 30254134 CCCGCATCCCCAAGAT-TCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTGAAT 30254076 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | || |||||||| |||||||| ||||| || Sbjct 30254075 AAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 30254038 Score = 87.8 bits (96), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| || ||||| | ||| | || ||| || ||||| || || | Sbjct 30253357 ACCAAGGATAACAATCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGT 30253298 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| || Sbjct 30253297 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 30253238 Query 476171 GCT 476173 ||| Sbjct 30253237 GCT 30253235 >seq25 Length=39536964 Score = 86.0 bits (94), Expect = 4e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || || || ||||| ||| || | ||||||||| |||| || || Sbjct 29075618 AGGTGAACGACCCTTGACGAAAGACAATCACCTTTTGGGAACTTTTGATCTGACTGGAAT 29075559 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 ||||||||||||| | || || || || |||||||| || ||||| || |||| ||||| Sbjct 29075558 TCCTCCTGCTCCCCGTGGGGTCCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG 29075499 Query 476155 TATTCTT 476161 |||||| Sbjct 29075498 CATTCTT 29075492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267765822311276