Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq23 361 6e-95 seq19 190 2e-43 seq10 102 9e-17 >seq23 Length=55726280 Score = 361 bits (400), Expect = 6e-95 Identities = 676/985 (69%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||||| ||| ||| || ||||| || Sbjct 14980091 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCAAACTTATTGGC 14980150 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| | | | | || ||||||| || ||| || | || || ||||| || Sbjct 14980151 AAACAAGTGGTG--CATGC-GCAGCATCCAGTTCAAGTCACCTGCTCCAAAGACGCACAC 14980207 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | ||| || ||| |||| || ||||| | || || || | | ||||||||| Sbjct 14980208 AGAACGAACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCACCCTTGGAAATGTCACCTTC 14980267 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||| || || ||||| ||||||||||| |||| || || | Sbjct 14980268 AAAGTACTGCCACTTGACAAATCTAGCAATCGCATGCATGTCGGACATGTCATACTTATG 14980327 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || | || || ||||| || |||||||| || | || Sbjct 14980328 GCTTAAGGACAGCGAGCCTGGGACTTCAGGGATCCGCTGAAGAGTGGCCCAGAGATACTC 14980387 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| |||| | | || Sbjct 14980388 ATCCGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTCTGGATTTTTTCATTCTCTAG 14980447 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 ||||| || || || | || ||||| || || ||||| || || | || | Sbjct 14980448 AACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGCGT 14980507 Query 160472 GGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||||||| || ||||| | || | ||| || || | | Sbjct 14980508 TTCAAGAGGAGG-GTGCACTTTGTCAGTCCCTGTGTTTGTCAGCTTTCCATTTACGACTG 14980566 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| |||||||| | | || | | |||||| | || || ||||| ||| Sbjct 14980567 CATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCAGTTTCTAGGTTGT 14980626 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | || | ||| || |||| | |||| || || ||||| || || | ||||| | Sbjct 14980627 TTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 14980686 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | |||| || | || |||| ||||||||| | || |||| || |||||| || Sbjct 14980687 CCATACCACAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTCTGTAGAGGTCCTGCA 14980746 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | || ||||| ||||| ||||| || |||||||| ||| |||| || | || Sbjct 14980747 TGCAGTTGAGGTCAGCCTGAACGCGACTCCATGAGGCGTACACCACGCTCTCCAGCTGAC 14980806 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827 ||||||||||||| ||| |||||| || |||| || |||| |||||| |||| | | Sbjct 14980807 TGGCCACAAAGACATTACTGAAACAGGATGCGATGCCAATCACCGCCGCCAAAAAGGA-A 14980865 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | |||| |||||| || | |||||| | ||||| ||| ||||||||||| Sbjct 14980866 TC--CTCTGATTTTCTGTCCACATGAATGCAATAGAAATTCTGTGGCATGTAGATGGCCC 14980923 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | || ||||| || ||||| |||| Sbjct 14980924 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACGACTATAGAATATGCTATTGGAA 14980983 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 |||| | ||| || ||| |||| | | || || ||| ||||||| ||| || Sbjct 14980984 ACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCCTCTTGATGAAAGAAG 14981043 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||||| |||||||| || || Sbjct 14981044 TACAATCATTGGTCATGTTTATGTA 14981068 >seq19 Length=59975221 Score = 190 bits (210), Expect = 2e-43 Identities = 222/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 ||| || ||||| || || || || || ||||||||||| || | || || || ||||| Sbjct 45341625 TCCTGAGATCTTCCCGGAACCAAAGGTATTGAAGAGGCAATTGTAACACCCCTCATCCTC 45341684 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || |||||||||||| || || | |||||||| |||| || | ||| || ||||| | Sbjct 45341685 CAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAGTCCTAGCTGAGTGATGTTTAT 45341744 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 |||||||||| ||| || || ||||| ||||||| || |||||||||| |||||| Sbjct 45341745 CTTGTCTTTATAAGCAGGCTGGACCACAACCCCGTGGTCCTTGCTGAAGGTGATCATGTT 45341804 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409 || ||| | || | ||| || |||||||| || || |||| || || | || || Sbjct 45341805 TTCTGGGATCGTAGGCTTGATTTTCTGCCATGTCACAATCAAGACTTCCTGGGAAGTTTG 45341864 Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 |||||| ||| | | ||||| || ||||||||||| ||| |||||||| || || || Sbjct 45341865 CAGGGAGCATTTTAAGGAAGCAGGTGTGTTCAGCAGCACTCTTTCATCTTGGGTCACCAC 45341924 >seq10 Length=83980604 Score = 102 bits (112), Expect = 9e-17 Identities = 342/529 (65%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 47809048 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCCTCCACATGAATGAATGAATCTGCT 47808989 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| || || || || | ||| | ||||| | | || Sbjct 47808988 GGAATATAATTTTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 47808929 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| || ||||||||||| | Sbjct 47808928 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATGGAGTTTTCAAAGGAA 47808869 Query 176412 AAATAGAACTTACATGAGCCTAACAATGGT----ATTAGGTCCGGATTGGAGATGTGGTT 176467 | ||| || || || | || ||||| || | | || | | | Sbjct 47808868 AGATAAAATTTGCAAG----TAGATATGGTAGGAATCAAATTTTTATCATTCACATACTC 47808813 Query 176468 TCCAACAGCATTGCCGTATACGTGTNNNNNNNNATATTTTTG--TAACTCCATGTAATAT 176525 ||||| || ||||| ||| || | ||| ||||| || || ||||||| Sbjct 47808812 TCCAAATGC-TTGCC-CATAGGTATGGATTTCAATACTTTTGCTTAGTTCATTGTAATAC 47808755 Query 176526 TGCGATCTGACGTAATCTGGGTTCCAATTGCTTACTACCCAACATATGAGTTTATCCTTT 176585 | ||| ||| || |||||||| || ||||| ||||| || | | || || || Sbjct 47808754 TTGACCCTGGCGTGCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTTCTCTTTG 47808695 Query 176586 TGTGGGA--TCCGTGATGTAGTGGTAGTATTTTTAATAATCAATGAACCATAAGGTACAG 176643 ||| | || | | || ||| | | | | |||| | |||||||| || Sbjct 47808694 CTTGGCACTTCAAACACGAAGGGGT--TTGTGCTCACCGTCAAGAAGCCATAAGGCACTT 47808637 Query 176644 TGATATCTGAATCCTGTCTATAAGTTACTGTAATATTAAAGAGATGTTCCAAATCTATCT 176703 ||||||||| || | | |||||| | || | ||| || || || || | | | ||| Sbjct 47808636 GGATATCTGAGTCGCGGCGATAAGTCAGAGTCAGATTGAACAGGTGCTCAATACCACTCT 47808577 Query 176704 TTTTAGGACTGTTACTGGGGGATTCAAAATTTATCCAGATCCATTTTTG 176752 ||| || ||| | |||| ||||| ||||| |||||||||||||| || Sbjct 47808576 TTTGGGGTGTGTGAGTGGGTGATTCCAAATTCATCCAGATCCATTTCTG 47808528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577149666732120